Click here to switch to the map view.

The map label for this gene is 114798604

Identifier: 114798604

GI number: 114798604

Start: 1983566

End: 1984210

Strand: Direct

Name: 114798604

Synonym: HNE_1913

Alternate gene names: NA

Gene position: 1983566-1984210 (Clockwise)

Preceding gene: 114798643

Following gene: 114799887

Centisome position: 53.54

GC content: 60.31

Gene sequence:

>645_bases
ATGACCAAGCCAGCGGAGCCTCGCGCCTTCTCTGAAAGCAGTCCTCGTCAGGAGGGTCACCTTTCCGGCTGGAACGAGGC
TCGCGGCTTCGGCTTTCTGAAGGCCGTTGATGGCGGGCCAGATGCCTTTGCCCATATCCGCGCCTTCGCCAAGGAAGAAC
GCCATATCGAAGAAGGCCATCTGTATAGCTATCAGACAGAGACCGACGAGGCCGGCCGTCTGCGCGCCGCAGACATCCGC
CCCATCCGCCCGGTCCGTCCCGAGCCGGTTCAGCCCAGCCTGCTTCACAAACTGCTCTCGCGGTCTCCGCGGATACTGGT
AATACCGGCATTCCTGTTCATTGCGATCGCCGTGGCCATTACCACGACAGTCTCGCCGGGATGGTTCATCGTATACGGCG
TTGCCAGCATTGCCTGCTTCATCGGTTATGGATTGGACAAACGCGCCGCCACGCACAAGCAATGGCGCGTTTCAGAAACC
ATCCTGTTGATGGTTGGCCTGGTGGGCGGCTGGCCGGGGGCGATTCTGGCGCAGGAGTTTTTCCGTCACAAGACGAAAAA
GCCCGCCTTCCGTACACTGTTCTGGATGAGCGTTGCCATCAACATGGCCGCCTTCGTTCAGATTGCCGCCTTTACCGGCG
CCTGA

Upstream 100 bases:

>100_bases
CCGAGGTCGAAACCTCAGACACATCCGGTGTTCTTGACGGTGATATTGACCGTTTCCTCTCTGCGGCGCTGGCCGCATCG
GTAAGCAAGGACCAGGACGC

Downstream 100 bases:

>100_bases
CCGTTCCGCCCGTCGCCAGGGCCAGCGCCTTGGCGAACACAGTCGGCAATCCGGTCTCCTCTGAAGGATCAGCCCATGTC
CCCTCGCCCGCAGGGCTGTT

Product: cold shock DNA-binding membrane protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 214; Mature: 213

Protein sequence:

>214_residues
MTKPAEPRAFSESSPRQEGHLSGWNEARGFGFLKAVDGGPDAFAHIRAFAKEERHIEEGHLYSYQTETDEAGRLRAADIR
PIRPVRPEPVQPSLLHKLLSRSPRILVIPAFLFIAIAVAITTTVSPGWFIVYGVASIACFIGYGLDKRAATHKQWRVSET
ILLMVGLVGGWPGAILAQEFFRHKTKKPAFRTLFWMSVAINMAAFVQIAAFTGA

Sequences:

>Translated_214_residues
MTKPAEPRAFSESSPRQEGHLSGWNEARGFGFLKAVDGGPDAFAHIRAFAKEERHIEEGHLYSYQTETDEAGRLRAADIR
PIRPVRPEPVQPSLLHKLLSRSPRILVIPAFLFIAIAVAITTTVSPGWFIVYGVASIACFIGYGLDKRAATHKQWRVSET
ILLMVGLVGGWPGAILAQEFFRHKTKKPAFRTLFWMSVAINMAAFVQIAAFTGA
>Mature_213_residues
TKPAEPRAFSESSPRQEGHLSGWNEARGFGFLKAVDGGPDAFAHIRAFAKEERHIEEGHLYSYQTETDEAGRLRAADIRP
IRPVRPEPVQPSLLHKLLSRSPRILVIPAFLFIAIAVAITTTVSPGWFIVYGVASIACFIGYGLDKRAATHKQWRVSETI
LLMVGLVGGWPGAILAQEFFRHKTKKPAFRTLFWMSVAINMAAFVQIAAFTGA

Specific function: Unknown

COG id: COG3326

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23688; Mature: 23556

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKPAEPRAFSESSPRQEGHLSGWNEARGFGFLKAVDGGPDAFAHIRAFAKEERHIEEGH
CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
LYSYQTETDEAGRLRAADIRPIRPVRPEPVQPSLLHKLLSRSPRILVIPAFLFIAIAVAI
EEEEECCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
TTTVSPGWFIVYGVASIACFIGYGLDKRAATHKQWRVSETILLMVGLVGGWPGAILAQEF
HHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FRHKTKKPAFRTLFWMSVAINMAAFVQIAAFTGA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TKPAEPRAFSESSPRQEGHLSGWNEARGFGFLKAVDGGPDAFAHIRAFAKEERHIEEGH
CCCCCCCCCCCCCCCCCCCCCCCCHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCC
LYSYQTETDEAGRLRAADIRPIRPVRPEPVQPSLLHKLLSRSPRILVIPAFLFIAIAVAI
EEEEECCCCCCCCEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEHHHHHHHHHHHHH
TTTVSPGWFIVYGVASIACFIGYGLDKRAATHKQWRVSETILLMVGLVGGWPGAILAQEF
HHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
FRHKTKKPAFRTLFWMSVAINMAAFVQIAAFTGA
HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA