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The map label for this gene is ycaD [C]

Identifier: 114798292

GI number: 114798292

Start: 1680923

End: 1682266

Strand: Direct

Name: ycaD [C]

Synonym: HNE_1644

Alternate gene names: 114798292

Gene position: 1680923-1682266 (Clockwise)

Preceding gene: 114800224

Following gene: 114797475

Centisome position: 45.37

GC content: 67.78

Gene sequence:

>1344_bases
TTGCTTGGCAGGCCGGGGCTGGTCCTGTCCGGACACGGCGGATTTGCGGTCTACCGGAACATTCTTGTTCTGGTGGCCGC
ACTGACGCTCCTTCAGGGCGCCATGGCCGCGCTCGCAATGGTGATGTCACTGAAGCTGCTCGCCAATGGCGTGGCTGAAA
CCGGCATCGGCCTCGTCGCCTCGGCCTATTCGGCGGGCTTTCTCGGCGGCACGCTCATCGCGCCCCACGAGATCCGCCGC
ATCGGACACATCCGCACCTTCACGCTGCTGGCGGGCATCTGCGCGCTCGCCGCATTGATGCTGCCCATCGCCGGGCGAGA
GATCGTGATCTGGTCGTTGCTCCTCGCGCTCGCGGGGGTAGGGGCCGCCGGTATGCTCACGGCCGGTGAAAGCTGGATCG
CCAATGCCGCCCCGCCACAACAGCGCGGCGCTATCCTCGGTTTCTACCACATGGTCTCCAAGACCGGCGCGATTGCCGCG
CCTTTCGTGGTTGCTGCCGCCCTCTCAGGGCTGGGCGCCTTCATGGTCGTGGCCGGTCTGTTCGTTGCCGCGCTGCTTCC
CGTCGCCGCCACCAATCGCAGCCAGCCAGAACTTGTCGCCGCCAAACCATTCGGCCCCAGACGATTGCTCTCCCTCGCGC
CGGCCTCCGTCTTCGCCGCCCTCTGCGCCGGCGCCGTCAATAATTCCGTTGCCCAGCTCTACCCCGTCTTCGCCACGTCC
ATCCGCCCGGATGACGCCGCCGCCTTCTCGGCCCAGCTCAACGGCGCCATCCTCGCCGGCGCGATGGTCGGCCTCTGGCC
CATCGGTCTGCTGTCGGACCGGCTCGACCGCCGCATCGTCATCGCTGCCGCCGCCGCTATCGGCGCGGGCGCCGCCATCG
GCCTCGCGCTGACAACCGCCATCAACATACCCTTCCTCACGCTCCTCCTCGCCGCTCTCTTCGGCGCAGGCTCACTCAGC
TACTACGCCGTGGCCGTCGCCAACGCTGCCGACCGTGCCGCGCCGGAGGAAATCACCTCCATGATGGCGGGCATCCTCGT
CATCTGGGGCATCGGCTCGGTCATCGGACCATTGATCGCAGGCGCCTTTCTCCAGCTCCTTCCGGGCGGCGGCGGTCTTT
TCCTGTTCGCGGGTCTGGCACTTGCAGGCCTTGCGGTCGCGTGCCTCTCCCGCGCGGCCATCTCGGCCCCCGTGCCGACA
GATGCGCGCGAACCCTTTTCCGTATCCCCCGCCACCAGTCTTGCCATCGCGGAGTTTGACCCGCGCGGCGAGCCTGAACA
ATCCGACCAGCCAGACCTTTTCGCAGGGCCCATGCCTGCCAGCCCGCAGGAGACTGCCTCATGA

Upstream 100 bases:

>100_bases
ATTTCGACAAGGCCATCTGCGCCCTGCACGAAGCGCTGGTCGAACAGGTAAGCGTTGCCACGCCGCGCGCTGAGGCCTTG
CGCCCGGCGGCATGATCCGA

Downstream 100 bases:

>100_bases
TCACTGCTATCAGCTTCGTCCTTATACTGCTTTCCTTTGTGGTCATCGGCCTCGCTTCTGGCCGTAAGGCAACAGGCAAG
CGAAAGGATTATTATCTGGC

Product: major facilitator family transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MLGRPGLVLSGHGGFAVYRNILVLVAALTLLQGAMAALAMVMSLKLLANGVAETGIGLVASAYSAGFLGGTLIAPHEIRR
IGHIRTFTLLAGICALAALMLPIAGREIVIWSLLLALAGVGAAGMLTAGESWIANAAPPQQRGAILGFYHMVSKTGAIAA
PFVVAAALSGLGAFMVVAGLFVAALLPVAATNRSQPELVAAKPFGPRRLLSLAPASVFAALCAGAVNNSVAQLYPVFATS
IRPDDAAAFSAQLNGAILAGAMVGLWPIGLLSDRLDRRIVIAAAAAIGAGAAIGLALTTAINIPFLTLLLAALFGAGSLS
YYAVAVANAADRAAPEEITSMMAGILVIWGIGSVIGPLIAGAFLQLLPGGGGLFLFAGLALAGLAVACLSRAAISAPVPT
DAREPFSVSPATSLAIAEFDPRGEPEQSDQPDLFAGPMPASPQETAS

Sequences:

>Translated_447_residues
MLGRPGLVLSGHGGFAVYRNILVLVAALTLLQGAMAALAMVMSLKLLANGVAETGIGLVASAYSAGFLGGTLIAPHEIRR
IGHIRTFTLLAGICALAALMLPIAGREIVIWSLLLALAGVGAAGMLTAGESWIANAAPPQQRGAILGFYHMVSKTGAIAA
PFVVAAALSGLGAFMVVAGLFVAALLPVAATNRSQPELVAAKPFGPRRLLSLAPASVFAALCAGAVNNSVAQLYPVFATS
IRPDDAAAFSAQLNGAILAGAMVGLWPIGLLSDRLDRRIVIAAAAAIGAGAAIGLALTTAINIPFLTLLLAALFGAGSLS
YYAVAVANAADRAAPEEITSMMAGILVIWGIGSVIGPLIAGAFLQLLPGGGGLFLFAGLALAGLAVACLSRAAISAPVPT
DAREPFSVSPATSLAIAEFDPRGEPEQSDQPDLFAGPMPASPQETAS
>Mature_447_residues
MLGRPGLVLSGHGGFAVYRNILVLVAALTLLQGAMAALAMVMSLKLLANGVAETGIGLVASAYSAGFLGGTLIAPHEIRR
IGHIRTFTLLAGICALAALMLPIAGREIVIWSLLLALAGVGAAGMLTAGESWIANAAPPQQRGAILGFYHMVSKTGAIAA
PFVVAAALSGLGAFMVVAGLFVAALLPVAATNRSQPELVAAKPFGPRRLLSLAPASVFAALCAGAVNNSVAQLYPVFATS
IRPDDAAAFSAQLNGAILAGAMVGLWPIGLLSDRLDRRIVIAAAAAIGAGAAIGLALTTAINIPFLTLLLAALFGAGSLS
YYAVAVANAADRAAPEEITSMMAGILVIWGIGSVIGPLIAGAFLQLLPGGGGLFLFAGLALAGLAVACLSRAAISAPVPT
DAREPFSVSPATSLAIAEFDPRGEPEQSDQPDLFAGPMPASPQETAS

Specific function: Unknown

COG id: COG0477

COG function: function code GEPR; Permeases of the major facilitator superfamily

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily. YcaD (TC 2.A.1.26) family [H]

Homologues:

Organism=Escherichia coli, GI1787126, Length=338, Percent_Identity=27.810650887574, Blast_Score=83, Evalue=4e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 44836; Mature: 44836

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGRPGLVLSGHGGFAVYRNILVLVAALTLLQGAMAALAMVMSLKLLANGVAETGIGLVA
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAYSAGFLGGTLIAPHEIRRIGHIRTFTLLAGICALAALMLPIAGREIVIWSLLLALAGV
HHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
GAAGMLTAGESWIANAAPPQQRGAILGFYHMVSKTGAIAAPFVVAAALSGLGAFMVVAGL
CCHHHHCCCCHHCCCCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
FVAALLPVAATNRSQPELVAAKPFGPRRLLSLAPASVFAALCAGAVNNSVAQLYPVFATS
HHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHC
IRPDDAAAFSAQLNGAILAGAMVGLWPIGLLSDRLDRRIVIAAAAAIGAGAAIGLALTTA
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHCHHHHHHHHHHH
INIPFLTLLLAALFGAGSLSYYAVAVANAADRAAPEEITSMMAGILVIWGIGSVIGPLIA
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GAFLQLLPGGGGLFLFAGLALAGLAVACLSRAAISAPVPTDAREPFSVSPATSLAIAEFD
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC
PRGEPEQSDQPDLFAGPMPASPQETAS
CCCCCCCCCCCCCEECCCCCCCCCCCC
>Mature Secondary Structure
MLGRPGLVLSGHGGFAVYRNILVLVAALTLLQGAMAALAMVMSLKLLANGVAETGIGLVA
CCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SAYSAGFLGGTLIAPHEIRRIGHIRTFTLLAGICALAALMLPIAGREIVIWSLLLALAGV
HHHHHHCCCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
GAAGMLTAGESWIANAAPPQQRGAILGFYHMVSKTGAIAAPFVVAAALSGLGAFMVVAGL
CCHHHHCCCCHHCCCCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
FVAALLPVAATNRSQPELVAAKPFGPRRLLSLAPASVFAALCAGAVNNSVAQLYPVFATS
HHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHCHHHHHHHHHHHHHCCHHHHHHHHHHHC
IRPDDAAAFSAQLNGAILAGAMVGLWPIGLLSDRLDRRIVIAAAAAIGAGAAIGLALTTA
CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHCHHHHHHHHHHH
INIPFLTLLLAALFGAGSLSYYAVAVANAADRAAPEEITSMMAGILVIWGIGSVIGPLIA
HHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GAFLQLLPGGGGLFLFAGLALAGLAVACLSRAAISAPVPTDAREPFSVSPATSLAIAEFD
HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEECC
PRGEPEQSDQPDLFAGPMPASPQETAS
CCCCCCCCCCCCCEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA