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The map label for this gene is exbD2 [H]

Identifier: 114798118

GI number: 114798118

Start: 2792813

End: 2793232

Strand: Reverse

Name: exbD2 [H]

Synonym: HNE_2632

Alternate gene names: 114798118

Gene position: 2793232-2792813 (Counterclockwise)

Preceding gene: 114798302

Following gene: 114797242

Centisome position: 75.39

GC content: 54.52

Gene sequence:

>420_bases
ATGGCTAGAAAAAAACGCCTGGCAGCGGGTGGGGGCAGCGCAGAGGATGACGTGAACCTGACGCCAATGTTGGACGTCGT
GTTCATCCTGCTCATCTTCTTCATCGTGACCGCCCAGTTCATCAAGGAACCGGGAGTGCCGATCGTTCGTCCGGATGTGG
ATAACAAGGCAGCGGCCAAGCCGCTCGCCATCCTCATCGCGATCAACGAGAACAGCGAAATCTACATTGATAAACAGATT
GTGAGCCAGGACGAGATTGGCTTCGTTATCAAGGAGATGCGCCTGGATAACCCGCGCGGCGAGGTTGTAATCCAGACCGA
TGTCGATGCTGAAGCCCAGGTGATGGTTGACGTGATGGAAGCGATCAACAAGATTGATGGGGATACGGTCATCAACATCT
CGGCGAAGACGACGGGCTAA

Upstream 100 bases:

>100_bases
ACCCGCTCGGGCGTTGTGGTGAAGATCCGGGACGAAGCGTACAATGCGGGCTTCACTGACCGCGTGAACATCGTCATTTC
GCAGACCTAGGAGACACCCA

Downstream 100 bases:

>100_bases
GGAGGATCGGTATGCTAAACAATCCATTCATGCGCCTCTTGGTTGGTGTGGTCATTGCCATTCCGATCGTGGTGATCCTC
TTCCTCATGATGAGTGCGCT

Product: putative TonB system transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 138

Protein sequence:

>139_residues
MARKKRLAAGGGSAEDDVNLTPMLDVVFILLIFFIVTAQFIKEPGVPIVRPDVDNKAAAKPLAILIAINENSEIYIDKQI
VSQDEIGFVIKEMRLDNPRGEVVIQTDVDAEAQVMVDVMEAINKIDGDTVINISAKTTG

Sequences:

>Translated_139_residues
MARKKRLAAGGGSAEDDVNLTPMLDVVFILLIFFIVTAQFIKEPGVPIVRPDVDNKAAAKPLAILIAINENSEIYIDKQI
VSQDEIGFVIKEMRLDNPRGEVVIQTDVDAEAQVMVDVMEAINKIDGDTVINISAKTTG
>Mature_138_residues
ARKKRLAAGGGSAEDDVNLTPMLDVVFILLIFFIVTAQFIKEPGVPIVRPDVDNKAAAKPLAILIAINENSEIYIDKQIV
SQDEIGFVIKEMRLDNPRGEVVIQTDVDAEAQVMVDVMEAINKIDGDTVINISAKTTG

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15123; Mature: 14992

Theoretical pI: Translated: 4.24; Mature: 4.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKKRLAAGGGSAEDDVNLTPMLDVVFILLIFFIVTAQFIKEPGVPIVRPDVDNKAAAK
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCC
PLAILIAINENSEIYIDKQIVSQDEIGFVIKEMRLDNPRGEVVIQTDVDAEAQVMVDVME
CEEEEEEECCCCEEEEEHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHH
AINKIDGDTVINISAKTTG
HHHHCCCCEEEEEEECCCC
>Mature Secondary Structure 
ARKKRLAAGGGSAEDDVNLTPMLDVVFILLIFFIVTAQFIKEPGVPIVRPDVDNKAAAK
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCC
PLAILIAINENSEIYIDKQIVSQDEIGFVIKEMRLDNPRGEVVIQTDVDAEAQVMVDVME
CEEEEEEECCCCEEEEEHHHCCCCHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHH
AINKIDGDTVINISAKTTG
HHHHCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]