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The map label for this gene is rarD [C]

Identifier: 114798108

GI number: 114798108

Start: 3669244

End: 3670155

Strand: Reverse

Name: rarD [C]

Synonym: HNE_3537

Alternate gene names: 114798108

Gene position: 3670155-3669244 (Counterclockwise)

Preceding gene: 114799847

Following gene: 114799185

Centisome position: 99.06

GC content: 63.16

Gene sequence:

>912_bases
ATGAGCCCCGCCCTTCGCCTTGGTTTTCCCGCTGCTGTCATCTCCTATCTGGTATGGGGGAGCCTGCCGCTTTACATCCG
CGCCATGCAGCATACCGGCGCGCTGGAGCTGCTGGCCCACCGCATCCTCTGGTCGGTGCCCACAGCTATTATCTTCATCG
CGATTGCGGCCAACTGGAGAGATGTGCGCGCCGCCTTCTCCGGCAGCAATCTGAAATGGCTGGCCCTGTCGGGCCTGCTG
ATCGGCGCGAACTGGACGATCTATATCTGGGCGGTGAATGCCGATCGCACGATGGAGGCCTCGCTCGGCTATTACATCAA
TCCGCTGGTCAATGTGCTGTTCGGCATGCTGATCTTTTCGGAGAAGCTGCGCCCGGCCCAATGGGTGGCCGTCGGCATTG
CCGCCATCGGCGTCGGCGTGATGGCCTTTGCTTTCGGGCACATCCCATGGGTGGCGCTGGCGCTGTGTGCCACCTTCGCC
AGCTATTCGGTGATCCGCAAGAAAGTGGCAATCGACAGCCGCGCGGGCTTTCTGGTGGAGGTGGTGTTGCTGGCGCCGGT
GGCGCTTGGCTGGCTCGTCTGGTTTGCCACCACCCAGCCCGGCGGCCGCTGGCTGGGGGAAGGGGGCTGGGACATCCTGA
TGCTGATGGCGGCCGGGCCGATCACCGCGGTGCCGCTTATTTTCTTCGCTCTGGCCACAAAGCGCCTGCGCTTTTCCACC
ATCGGGATGATGCAGTATATCGGCCCCACCATTCAGTTCCTGATCGCAGTACTCGTTTTCAAGGAAGGCTTCGGCATGAC
CCATGCCATCGCCTTTGCCTTCATCTGGACGGCGCTGATTGTCTTCACCGCTGACAGCCTGATGGGCGACGCCAAGGCCC
GGCGCCTCGCGCGCACGGCGCGGCCTGCCTGA

Upstream 100 bases:

>100_bases
GCCCTTTGCAGGGGCGGCCTTTTCACATTGCCGGGATGAAGATGGCGCGGCGCAAATTCCGGGTGGCGCGCGGCTTCAGC
CAAGCATATAGGACGCCGCC

Downstream 100 bases:

>100_bases
GCCCACCAAAGAAAACAGCGGCCTCCGCCTGGAAGCCGCTGCAAAGGTAAAGTGCATGACGGAAATGGAGCCTTCCAATT
TCCGCATCTGTCGTTGCAAT

Product: chloramphenicol-sensitivity protein (RarD) family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 302

Protein sequence:

>303_residues
MSPALRLGFPAAVISYLVWGSLPLYIRAMQHTGALELLAHRILWSVPTAIIFIAIAANWRDVRAAFSGSNLKWLALSGLL
IGANWTIYIWAVNADRTMEASLGYYINPLVNVLFGMLIFSEKLRPAQWVAVGIAAIGVGVMAFAFGHIPWVALALCATFA
SYSVIRKKVAIDSRAGFLVEVVLLAPVALGWLVWFATTQPGGRWLGEGGWDILMLMAAGPITAVPLIFFALATKRLRFST
IGMMQYIGPTIQFLIAVLVFKEGFGMTHAIAFAFIWTALIVFTADSLMGDAKARRLARTARPA

Sequences:

>Translated_303_residues
MSPALRLGFPAAVISYLVWGSLPLYIRAMQHTGALELLAHRILWSVPTAIIFIAIAANWRDVRAAFSGSNLKWLALSGLL
IGANWTIYIWAVNADRTMEASLGYYINPLVNVLFGMLIFSEKLRPAQWVAVGIAAIGVGVMAFAFGHIPWVALALCATFA
SYSVIRKKVAIDSRAGFLVEVVLLAPVALGWLVWFATTQPGGRWLGEGGWDILMLMAAGPITAVPLIFFALATKRLRFST
IGMMQYIGPTIQFLIAVLVFKEGFGMTHAIAFAFIWTALIVFTADSLMGDAKARRLARTARPA
>Mature_302_residues
SPALRLGFPAAVISYLVWGSLPLYIRAMQHTGALELLAHRILWSVPTAIIFIAIAANWRDVRAAFSGSNLKWLALSGLLI
GANWTIYIWAVNADRTMEASLGYYINPLVNVLFGMLIFSEKLRPAQWVAVGIAAIGVGVMAFAFGHIPWVALALCATFAS
YSVIRKKVAIDSRAGFLVEVVLLAPVALGWLVWFATTQPGGRWLGEGGWDILMLMAAGPITAVPLIFFALATKRLRFSTI
GMMQYIGPTIQFLIAVLVFKEGFGMTHAIAFAFIWTALIVFTADSLMGDAKARRLARTARPA

Specific function: Unknown

COG id: COG2962

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 DUF6 domain [H]

Homologues:

Organism=Escherichia coli, GI48994976, Length=292, Percent_Identity=39.7260273972603, Blast_Score=218, Evalue=5e-58,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000620
- InterPro:   IPR004626 [H]

Pfam domain/function: PF00892 DUF6 [H]

EC number: NA

Molecular weight: Translated: 33018; Mature: 32887

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSPALRLGFPAAVISYLVWGSLPLYIRAMQHTGALELLAHRILWSVPTAIIFIAIAANWR
CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
DVRAAFSGSNLKWLALSGLLIGANWTIYIWAVNADRTMEASLGYYINPLVNVLFGMLIFS
HHHHHHCCCCEEEEEEECEEEECCEEEEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHH
EKLRPAQWVAVGIAAIGVGVMAFAFGHIPWVALALCATFASYSVIRKKVAIDSRAGFLVE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VVLLAPVALGWLVWFATTQPGGRWLGEGGWDILMLMAAGPITAVPLIFFALATKRLRFST
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
IGMMQYIGPTIQFLIAVLVFKEGFGMTHAIAFAFIWTALIVFTADSLMGDAKARRLARTA
HHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RPA
CCC
>Mature Secondary Structure 
SPALRLGFPAAVISYLVWGSLPLYIRAMQHTGALELLAHRILWSVPTAIIFIAIAANWR
CCCCCCCCHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
DVRAAFSGSNLKWLALSGLLIGANWTIYIWAVNADRTMEASLGYYINPLVNVLFGMLIFS
HHHHHHCCCCEEEEEEECEEEECCEEEEEEEECCCCCHHHHCCHHHHHHHHHHHHHHHHH
EKLRPAQWVAVGIAAIGVGVMAFAFGHIPWVALALCATFASYSVIRKKVAIDSRAGFLVE
HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
VVLLAPVALGWLVWFATTQPGGRWLGEGGWDILMLMAAGPITAVPLIFFALATKRLRFST
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
IGMMQYIGPTIQFLIAVLVFKEGFGMTHAIAFAFIWTALIVFTADSLMGDAKARRLARTA
HHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
RPA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10952301 [H]