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The map label for this gene is 114797873

Identifier: 114797873

GI number: 114797873

Start: 3577889

End: 3578716

Strand: Reverse

Name: 114797873

Synonym: HNE_3439

Alternate gene names: NA

Gene position: 3578716-3577889 (Counterclockwise)

Preceding gene: 114800418

Following gene: 114798669

Centisome position: 96.59

GC content: 67.15

Gene sequence:

>828_bases
ATGCACCGCGTGATTGCCAGTCTCGCTTTCCTCCTTCTTCTGCCTTTGCAGGCCTTTGCCTGTGATCTGCGCATTCAGGG
CCGGCCCCTTGCCGTGGCGCCATATGTGGAGCGTGCCCAGCCGTGTCTGGCCCGCCCGCCCGCCGGGTTTGCCTTTGAAG
AGAGCCTGGAGGCGCGGTTTCTGGATCTGGTCAACAAGGAGCGCGCCGAGGCGGGCCTGGCGCCCTTGCAATTGCGCCGC
GAGCTGATCGACGCCGCCCGGCTGCACAGTCTCGACATGGCGGTGAACGGCTTCTTCGGCCATGTCGGCCCGGACGGGCG
GGGGCCGGGGGACCGGATCGCGGCGCTGGACCGGACGGCGCTGGCAGATTTCTCGGCGGAGAATGTCGCCACCGTTTCGC
GGGTTGGGGGGCGTATCGGCGCAAACTTCGCCGTCAAACGGCTCCACCGGAATCTGATGGACAGCCCGAGCCACCGCGAG
AACATCCTGCACTCCAAGGCGACCCATGTGGCCTTTGGCGTGGTGCGTACACAGGAAGGCGTGTGGGTGACGCAGCTGTT
CATGCGTGTCTCGGGAACCCTGGCGCGGGCCGCGCCATTACGGCTCAGCGCTGCCCAATCACTGCGTGAAAGACCCCTCG
GCCTCGAAGGCTGGCGGTTCGTTCGGTATGATATGGTGGCGCCTTCGGGCGATCCGTTTCCGGGGACGAGCGGCGCCCGG
CCAGGCCTGGACGCGCGGCTTGCCGCCTACGCGACCCAGCCGGGCGATGATCCGCGCTCGTATTACTGGATGCGGTTTCC
GGGGCCGGCGGTGACCGTCATTCCTTGA

Upstream 100 bases:

>100_bases
CGGTGCTGGCGCGGCTTCAGACGGCCGGGGTGATCTGAGCCCTTCTGGCGGCGTGAATTGCCAAGGTGAACGCGCCGGCC
TTCCGTGATAGGAAGGCGCT

Downstream 100 bases:

>100_bases
TCTGCTCACGATAACCAACAAGGAAACTGAATGTCTGAATCTCTCGAAGAATTCCGTAGGCGTTTGAATTCAGATTGGCT
TCCCTCGTACTGTTCTGAGC

Product: SCP-like extracellular family protein

Products: NA

Alternate protein names: SCP-Like Extracellular Protein; RNA Polymerase ECF-Subfamily Sigma Factor; Allergen V5/Tpx-1 ; Transmembrane Protein; Allergen V5/Tpx-1 Family Protein; Membrane-Anchored Protein; Bifunctional Protein Colicin V Production Protein; SCP-Like Extracellular Family Protein

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MHRVIASLAFLLLLPLQAFACDLRIQGRPLAVAPYVERAQPCLARPPAGFAFEESLEARFLDLVNKERAEAGLAPLQLRR
ELIDAARLHSLDMAVNGFFGHVGPDGRGPGDRIAALDRTALADFSAENVATVSRVGGRIGANFAVKRLHRNLMDSPSHRE
NILHSKATHVAFGVVRTQEGVWVTQLFMRVSGTLARAAPLRLSAAQSLRERPLGLEGWRFVRYDMVAPSGDPFPGTSGAR
PGLDARLAAYATQPGDDPRSYYWMRFPGPAVTVIP

Sequences:

>Translated_275_residues
MHRVIASLAFLLLLPLQAFACDLRIQGRPLAVAPYVERAQPCLARPPAGFAFEESLEARFLDLVNKERAEAGLAPLQLRR
ELIDAARLHSLDMAVNGFFGHVGPDGRGPGDRIAALDRTALADFSAENVATVSRVGGRIGANFAVKRLHRNLMDSPSHRE
NILHSKATHVAFGVVRTQEGVWVTQLFMRVSGTLARAAPLRLSAAQSLRERPLGLEGWRFVRYDMVAPSGDPFPGTSGAR
PGLDARLAAYATQPGDDPRSYYWMRFPGPAVTVIP
>Mature_275_residues
MHRVIASLAFLLLLPLQAFACDLRIQGRPLAVAPYVERAQPCLARPPAGFAFEESLEARFLDLVNKERAEAGLAPLQLRR
ELIDAARLHSLDMAVNGFFGHVGPDGRGPGDRIAALDRTALADFSAENVATVSRVGGRIGANFAVKRLHRNLMDSPSHRE
NILHSKATHVAFGVVRTQEGVWVTQLFMRVSGTLARAAPLRLSAAQSLRERPLGLEGWRFVRYDMVAPSGDPFPGTSGAR
PGLDARLAAYATQPGDDPRSYYWMRFPGPAVTVIP

Specific function: Unknown

COG id: COG2340

COG function: function code S; Uncharacterized protein with SCP/PR1 domains

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29996; Mature: 29996

Theoretical pI: Translated: 10.32; Mature: 10.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRVIASLAFLLLLPLQAFACDLRIQGRPLAVAPYVERAQPCLARPPAGFAFEESLEARF
CHHHHHHHHHHHHHHHHHHHHCEEECCCCEEECCHHHHCCCHHCCCCCCCHHHHHHHHHH
LDLVNKERAEAGLAPLQLRRELIDAARLHSLDMAVNGFFGHVGPDGRGPGDRIAALDRTA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LADFSAENVATVSRVGGRIGANFAVKRLHRNLMDSPSHRENILHSKATHVAFGVVRTQEG
HHCCCCCHHHHHHHHCCHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCC
VWVTQLFMRVSGTLARAAPLRLSAAQSLRERPLGLEGWRFVRYDMVAPSGDPFPGTSGAR
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
PGLDARLAAYATQPGDDPRSYYWMRFPGPAVTVIP
CCCCHHHHHHCCCCCCCCCCEEEEEECCCEEEECC
>Mature Secondary Structure
MHRVIASLAFLLLLPLQAFACDLRIQGRPLAVAPYVERAQPCLARPPAGFAFEESLEARF
CHHHHHHHHHHHHHHHHHHHHCEEECCCCEEECCHHHHCCCHHCCCCCCCHHHHHHHHHH
LDLVNKERAEAGLAPLQLRRELIDAARLHSLDMAVNGFFGHVGPDGRGPGDRIAALDRTA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHH
LADFSAENVATVSRVGGRIGANFAVKRLHRNLMDSPSHRENILHSKATHVAFGVVRTQEG
HHCCCCCHHHHHHHHCCHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEECCCC
VWVTQLFMRVSGTLARAAPLRLSAAQSLRERPLGLEGWRFVRYDMVAPSGDPFPGTSGAR
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCCCCCCC
PGLDARLAAYATQPGDDPRSYYWMRFPGPAVTVIP
CCCCHHHHHHCCCCCCCCCCEEEEEECCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA