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The map label for this gene is ybcS [C]

Identifier: 114797826

GI number: 114797826

Start: 1300272

End: 1301537

Strand: Direct

Name: ybcS [C]

Synonym: HNE_1271

Alternate gene names: 114797826

Gene position: 1300272-1301537 (Clockwise)

Preceding gene: 114799935

Following gene: 114798575

Centisome position: 35.09

GC content: 68.25

Gene sequence:

>1266_bases
TTGGGTGGTCCGCTTCGCACATCTGCAAAGGGACTCGAGCTGATCAAAGGCTTCGAGGGCTTCCGGCCGCGCGCAAGCCG
GCTGCCGGATGGGCGATGGATTGTGGGCTATGGCCACACGCGCACGGCGCGGCCTGGCTTGCAGGTGACCCCTCAGGACG
CTGAACTGGTGCTGGCGCATTCCGATCTGCCGCTGATCGAGCAGCTGATCCAGGATGAAGTGCTCGCCCCGCTGACCCAG
AACGAATTTGATGCGCTGGTGTCCTTTGCCTGGAATATCGGGCCGGGCGCGTTCCAGTCTTCCAGCGTGCTGGCAAACCT
CAATGAGGGCGACAGGCTCTCGGCCGCATCCGACATGTGGCTGTGGCGCAAGGGGCGTGTGAGCGGCGAGGTGAAGATCA
TCGACGCGCTGGTGCGCCGGCGGGCTGCGGAGATTTCGCTGTTCCTGACGCACCCTTCGGGCCCGGCGGCGGTGCCTGGC
GCGCTGATCCGGCCGATCCCCGAAGATGGCGGGCAGCCTTTCCCGCCGGCCTCTGAACGCACTGTCATCATCGAAGCGCG
TGGCGAGGGCGAGCCGCTGCTGCCGCGCGGACGCACGGCGGACACGACGCCCAAGGCTGCGGCCCGCGCCGTGAGCGAGC
GGATTGCGCGCATTCTGGGCGAGAGCCCGCCGCCACCACCCTCAACGCCGGGCAGGACGCTGGCACCGGGCGAGGAAGGC
CCGAGTGTTGAAGAGATCACCCGCGCAATTGCCGATCTGGCCGGCCCGGCGGATGACGCGCCGCTGCCACCGGCAACCGG
CGGAGTGCGGGGGGCGCCCGATGGGATTGAACGCCGCCGGCCCGCGCGGACTCAGCCGCCGTCTGCCACGGTTGCGCCGC
CGCCGGTAGAACCTGCTGCAGCCGCGATCATTGCGGCGCCACCGGTGCCCGAAGCCCTGCTGCCCCCGGCAGAGGCGGTG
ATTGTGGACGATCTGGCGCCTGTGGAAATCGATGAAAATGGTGTTCAGCGCGCGCTGGAGGAGAACGGGCATGTGACCCG
TCCTCCGGGCGCTGAAACGCTGGGGCGCTGGGTGCCGTATGCGCTGCTTTCCGGGTTGGGGCTGGTGAGCCTTGTTCTGG
GCATTGGCGAGTTGATCGACATGGCCGCTGAACCGGCGCTGCATGAAGGCGAAGCGTGGCTGGGGCCGCTGCTGGCGCTG
GGCGGCGGGTTCCTGTTTGTGGTGGCCACGTATTACCTTTACCGGGCGATGACGCAGGACGAGTGA

Upstream 100 bases:

>100_bases
TAATATCGCCAATTCTCACCTTTCAGGGGAAAGGGCGCGCCTTTTGCAGGGCGTCCCTGTAGGCATTTTGCCTGTTGTAC
CAGAATGGGAGCAACGGACT

Downstream 100 bases:

>100_bases
GCCGGTGACAGGCAGGCAGGGCCTTGCTAGGAAAGGGCCATGCTGACGAACACATATCCCTCTCTGAACTTCGATCTCGG
TGAAACTGCGGACATGATCC

Product: putative lysozyme

Products: Hydrolysed Peptidoglycan; Chitodextrin [C]

Alternate protein names: Phage Related Lysozyme; Phage-Related Lysozyme; Glycoside Hydrolase Family Protein; Phage Lysozyme; Glycoside Hydrolase Family; Phage Lysozyme Lysis Protein; Lysozyme Family Protein; Family; Gifsy-2 Prophage Lysozyme; Bacteriophage Lysozyme; Lysozyme-Family Localization Factor SpmX; APSE-2 Prophage; Glycoside Hydrolase

Number of amino acids: Translated: 421; Mature: 420

Protein sequence:

>421_residues
MGGPLRTSAKGLELIKGFEGFRPRASRLPDGRWIVGYGHTRTARPGLQVTPQDAELVLAHSDLPLIEQLIQDEVLAPLTQ
NEFDALVSFAWNIGPGAFQSSSVLANLNEGDRLSAASDMWLWRKGRVSGEVKIIDALVRRRAAEISLFLTHPSGPAAVPG
ALIRPIPEDGGQPFPPASERTVIIEARGEGEPLLPRGRTADTTPKAAARAVSERIARILGESPPPPPSTPGRTLAPGEEG
PSVEEITRAIADLAGPADDAPLPPATGGVRGAPDGIERRRPARTQPPSATVAPPPVEPAAAAIIAAPPVPEALLPPAEAV
IVDDLAPVEIDENGVQRALEENGHVTRPPGAETLGRWVPYALLSGLGLVSLVLGIGELIDMAAEPALHEGEAWLGPLLAL
GGGFLFVVATYYLYRAMTQDE

Sequences:

>Translated_421_residues
MGGPLRTSAKGLELIKGFEGFRPRASRLPDGRWIVGYGHTRTARPGLQVTPQDAELVLAHSDLPLIEQLIQDEVLAPLTQ
NEFDALVSFAWNIGPGAFQSSSVLANLNEGDRLSAASDMWLWRKGRVSGEVKIIDALVRRRAAEISLFLTHPSGPAAVPG
ALIRPIPEDGGQPFPPASERTVIIEARGEGEPLLPRGRTADTTPKAAARAVSERIARILGESPPPPPSTPGRTLAPGEEG
PSVEEITRAIADLAGPADDAPLPPATGGVRGAPDGIERRRPARTQPPSATVAPPPVEPAAAAIIAAPPVPEALLPPAEAV
IVDDLAPVEIDENGVQRALEENGHVTRPPGAETLGRWVPYALLSGLGLVSLVLGIGELIDMAAEPALHEGEAWLGPLLAL
GGGFLFVVATYYLYRAMTQDE
>Mature_420_residues
GGPLRTSAKGLELIKGFEGFRPRASRLPDGRWIVGYGHTRTARPGLQVTPQDAELVLAHSDLPLIEQLIQDEVLAPLTQN
EFDALVSFAWNIGPGAFQSSSVLANLNEGDRLSAASDMWLWRKGRVSGEVKIIDALVRRRAAEISLFLTHPSGPAAVPGA
LIRPIPEDGGQPFPPASERTVIIEARGEGEPLLPRGRTADTTPKAAARAVSERIARILGESPPPPPSTPGRTLAPGEEGP
SVEEITRAIADLAGPADDAPLPPATGGVRGAPDGIERRRPARTQPPSATVAPPPVEPAAAAIIAAPPVPEALLPPAEAVI
VDDLAPVEIDENGVQRALEENGHVTRPPGAETLGRWVPYALLSGLGLVSLVLGIGELIDMAAEPALHEGEAWLGPLLALG
GGFLFVVATYYLYRAMTQDE

Specific function: Essential For Lysis Of Bacterial Cell Wall, By Showing Cell Wall Hydrolyzing Activity (By Similarity). [C]

COG id: COG3772

COG function: function code R; Phage-related lysozyme (muraminidase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.2.1.17 [C]

Molecular weight: Translated: 44277; Mature: 44146

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGPLRTSAKGLELIKGFEGFRPRASRLPDGRWIVGYGHTRTARPGLQVTPQDAELVLAH
CCCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCCCCCCCCEECCCCCEEEEEE
SDLPLIEQLIQDEVLAPLTQNEFDALVSFAWNIGPGAFQSSSVLANLNEGDRLSAASDMW
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHH
LWRKGRVSGEVKIIDALVRRRAAEISLFLTHPSGPAAVPGALIRPIPEDGGQPFPPASER
EEECCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
TVIIEARGEGEPLLPRGRTADTTPKAAARAVSERIARILGESPPPPPSTPGRTLAPGEEG
EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PSVEEITRAIADLAGPADDAPLPPATGGVRGAPDGIERRRPARTQPPSATVAPPPVEPAA
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHH
AAIIAAPPVPEALLPPAEAVIVDDLAPVEIDENGVQRALEENGHVTRPPGAETLGRWVPY
EEEEECCCCCHHHCCCCCEEEECCCCCCEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
ALLSGLGLVSLVLGIGELIDMAAEPALHEGEAWLGPLLALGGGFLFVVATYYLYRAMTQD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
E
C
>Mature Secondary Structure 
GGPLRTSAKGLELIKGFEGFRPRASRLPDGRWIVGYGHTRTARPGLQVTPQDAELVLAH
CCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCEEEEECCCCCCCCCCEECCCCCEEEEEE
SDLPLIEQLIQDEVLAPLTQNEFDALVSFAWNIGPGAFQSSSVLANLNEGDRLSAASDMW
CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCHHHHH
LWRKGRVSGEVKIIDALVRRRAAEISLFLTHPSGPAAVPGALIRPIPEDGGQPFPPASER
EEECCCCCCHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCC
TVIIEARGEGEPLLPRGRTADTTPKAAARAVSERIARILGESPPPPPSTPGRTLAPGEEG
EEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
PSVEEITRAIADLAGPADDAPLPPATGGVRGAPDGIERRRPARTQPPSATVAPPPVEPAA
CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHH
AAIIAAPPVPEALLPPAEAVIVDDLAPVEIDENGVQRALEENGHVTRPPGAETLGRWVPY
EEEEECCCCCHHHCCCCCEEEECCCCCCEECHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
ALLSGLGLVSLVLGIGELIDMAAEPALHEGEAWLGPLLALGGGFLFVVATYYLYRAMTQD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHCC
E
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Peptidoglycan (N-acetylmuraminic acid and N-acetyl-D-glucosamine Residues); Chitodextrin (N-acetyl-D-glucosamine residues) [C]

Specific reaction: Hydrolysis of beta-linkage between N-acetylmuraminic acid and N-acetyl- D-glucosamine residues in peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrin [C]

General reaction: O-Glycosyl bond hydrolysis; glycosyltransfer to saccharides other alcohols and H2O [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA