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The map label for this gene is smpB

Identifier: 114797634

GI number: 114797634

Start: 2961333

End: 2961818

Strand: Reverse

Name: smpB

Synonym: HNE_2799

Alternate gene names: 114797634

Gene position: 2961818-2961333 (Counterclockwise)

Preceding gene: 114798403

Following gene: 114799234

Centisome position: 79.94

GC content: 63.79

Gene sequence:

>486_bases
ATGGCTACGAAGAAGAACGAACAGATCAAAGGGCGCACCGACGGGCTGGTGGCGGAAAACCGCCGCTCCCGGCGCGAGTA
TTCCGTGGAGGATACGCTGGAGGCTGGCATCATGCTGGTCGGCTCGGAAGTGAAATCGTTGCGCGAGGGGCGGGCGAACA
TTGCCGAGTCCTATGCGTCGGTCGAGCAGGGCGAGCTGTGGCTGATCAATGCCGAGATCCAGACTTATGGCGGGGCCAAC
CGCTTCAACCATGAGCCGCGCCGGAAGCGGAAGCTGCTGGTGTCGCGGCGGGAGCTCTCGAAGCTCAGCCAAGAGGTGGA
GCGGGCGGGGCGCACGATTGTGCCGCTGAAGCTTTACTTCAACGACAAGGGCCGGGCGAAGCTGCTGATTGGCGTCGCAA
CGGGCCGCAAGGCGCATGACAAGCGCGAGCATGAGGCCAAGCGCGACTGGGCGCGGGATAAAGCGCGGATCATGAAGGCA
GGGTAG

Upstream 100 bases:

>100_bases
GCCGGAGGTTCGCCTGCCGCTGACGGCGCCAGATGCGGCCGCTGAAGCGATGATCGACGCGGCCATGGCGCTGGCCGGTC
TGAACACCTAGATTGGGCCG

Downstream 100 bases:

>100_bases
ATGAGTTCTCGAAGAGATCGAACGCTTTTGATTCTTGATCTTGATGAAACGCTCGTCCACGCAAGTTCAACACCGCTGGA
CCGCGCAGCAGATTTCAGGG

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MATKKNEQIKGRTDGLVAENRRSRREYSVEDTLEAGIMLVGSEVKSLREGRANIAESYASVEQGELWLINAEIQTYGGAN
RFNHEPRRKRKLLVSRRELSKLSQEVERAGRTIVPLKLYFNDKGRAKLLIGVATGRKAHDKREHEAKRDWARDKARIMKA
G

Sequences:

>Translated_161_residues
MATKKNEQIKGRTDGLVAENRRSRREYSVEDTLEAGIMLVGSEVKSLREGRANIAESYASVEQGELWLINAEIQTYGGAN
RFNHEPRRKRKLLVSRRELSKLSQEVERAGRTIVPLKLYFNDKGRAKLLIGVATGRKAHDKREHEAKRDWARDKARIMKA
G
>Mature_160_residues
ATKKNEQIKGRTDGLVAENRRSRREYSVEDTLEAGIMLVGSEVKSLREGRANIAESYASVEQGELWLINAEIQTYGGANR
FNHEPRRKRKLLVSRRELSKLSQEVERAGRTIVPLKLYFNDKGRAKLLIGVATGRKAHDKREHEAKRDWARDKARIMKAG

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=158, Percent_Identity=45.5696202531646, Blast_Score=120, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_HYPNA (Q0BYG5)

Other databases:

- EMBL:   CP000158
- RefSeq:   YP_761478.1
- ProteinModelPortal:   Q0BYG5
- SMR:   Q0BYG5
- STRING:   Q0BYG5
- GeneID:   4288656
- GenomeReviews:   CP000158_GR
- KEGG:   hne:HNE_2799
- NMPDR:   fig|228405.5.peg.2684
- TIGR:   HNE_2799
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- PhylomeDB:   Q0BYG5
- ProtClustDB:   PRK05422
- BioCyc:   HNEP81032:HNE_2799-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18387; Mature: 18256

Theoretical pI: Translated: 10.87; Mature: 10.87

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATKKNEQIKGRTDGLVAENRRSRREYSVEDTLEAGIMLVGSEVKSLREGRANIAESYAS
CCCCCCCCCCCCCCCCHHCCHHHHHCCCHHHHHHHCEEEECHHHHHHHHHHHHHHHHHHH
VEQGELWLINAEIQTYGGANRFNHEPRRKRKLLVSRRELSKLSQEVERAGRTIVPLKLYF
CCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
NDKGRAKLLIGVATGRKAHDKREHEAKRDWARDKARIMKAG
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ATKKNEQIKGRTDGLVAENRRSRREYSVEDTLEAGIMLVGSEVKSLREGRANIAESYAS
CCCCCCCCCCCCCCCHHCCHHHHHCCCHHHHHHHCEEEECHHHHHHHHHHHHHHHHHHH
VEQGELWLINAEIQTYGGANRFNHEPRRKRKLLVSRRELSKLSQEVERAGRTIVPLKLYF
CCCCCEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEE
NDKGRAKLLIGVATGRKAHDKREHEAKRDWARDKARIMKAG
CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA