| Definition | Hyphomonas neptunium ATCC 15444 chromosome, complete genome. |
|---|---|
| Accession | NC_008358 |
| Length | 3,705,021 |
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The map label for this gene is purU [H]
Identifier: 114797552
GI number: 114797552
Start: 799594
End: 800451
Strand: Reverse
Name: purU [H]
Synonym: HNE_0787
Alternate gene names: 114797552
Gene position: 800451-799594 (Counterclockwise)
Preceding gene: 114798407
Following gene: 114798411
Centisome position: 21.6
GC content: 62.35
Gene sequence:
>858_bases TTGTCGCAGACCTTCATCCTTACCCTGAGTTGCCCGGACAGGGTTGGCCTCGTGGCCAGCCTTGCACGGCTCATGGAGGA GCATGGCTGCTTCATCGTCACCTCGCGCACCTTCGGTGATCCGCAGACGAACCGTTTCTTTGCCCGGCTGGTGTTCAGCC CGCCGGGCAATGGCGGTTCGCTCGACGCCGTGAAGGCCGCGATGGCGCCGCTCGCCGCAGAGATCGAAGCCGACTGGCAG ATCCGCTCGTCGGACGAAAAGCTGCGCACCCTGCTGCTGGTCTCGAAGTCAGACCATTGCGCCAACACGCTGCTCTACGC GGCGCGGCGCCATGAACTGCCCATCGAGATTACCGGCATCGTCTCCAATCATGACAGCCTCAAGCCGGCTTTTGCCCATT GGGGCCTGCCCTGGTTCCATGTCCCGGTCACGGCCGCATCCAAGCCCGACGCCGAAGCGCTCCTCTACAGTATCATTGAA GAGACCCGCTCCGAACTGGTCGTCCTTGCACGCTACATGCAGGTGCTCAGCGAGGAGGCCTGCCGCCGTCTTGAAGGCCG CGTCATCAACATCCACCATTCCTTCCTGCCCGGTTTCAAGGGCGCCCAGCCCTATCACCAGGCGCATGCCCGCGGCGTAA AAGTCATCGGCGCTACGGCCCATTATGTCACCGCCGATCTCGATGAAGGCCCGATCATCACCCAGGCCACCGAAACCATC GACCACACATTCACGCCAGAAGACATGGTCGAAACCGGCCGCCACATCGAAGGCATTGCCCTTCTGCGGGCGGTAAAAGC CCATGCCGAGCACCGCATTTTCCTGAATTCCGGCCGCACAGTCGTGTTCGCCCGGTAA
Upstream 100 bases:
>100_bases ACCAAGCTGTCGGGTGAACAGGCCGCGTATATCGGCGTGGAACAGACCGGCCCGTTCAAGCCGGAACATTACCGCTACTG ATCCGGCAGCGGGGACAGCC
Downstream 100 bases:
>100_bases GCCATTCCAAGAGGAGCCAAGAATGCCCCTGAAGTCCCATGAGTTCACCAGCGAGAGCGTCGCCGAAGGCCATCCCGACA AGGTTGCCGACCAGATTTCC
Product: formyltetrahydrofolate deformylase
Products: NA
Alternate protein names: Formyl-FH(4) hydrolase [H]
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSQTFILTLSCPDRVGLVASLARLMEEHGCFIVTSRTFGDPQTNRFFARLVFSPPGNGGSLDAVKAAMAPLAAEIEADWQ IRSSDEKLRTLLLVSKSDHCANTLLYAARRHELPIEITGIVSNHDSLKPAFAHWGLPWFHVPVTAASKPDAEALLYSIIE ETRSELVVLARYMQVLSEEACRRLEGRVINIHHSFLPGFKGAQPYHQAHARGVKVIGATAHYVTADLDEGPIITQATETI DHTFTPEDMVETGRHIEGIALLRAVKAHAEHRIFLNSGRTVVFAR
Sequences:
>Translated_285_residues MSQTFILTLSCPDRVGLVASLARLMEEHGCFIVTSRTFGDPQTNRFFARLVFSPPGNGGSLDAVKAAMAPLAAEIEADWQ IRSSDEKLRTLLLVSKSDHCANTLLYAARRHELPIEITGIVSNHDSLKPAFAHWGLPWFHVPVTAASKPDAEALLYSIIE ETRSELVVLARYMQVLSEEACRRLEGRVINIHHSFLPGFKGAQPYHQAHARGVKVIGATAHYVTADLDEGPIITQATETI DHTFTPEDMVETGRHIEGIALLRAVKAHAEHRIFLNSGRTVVFAR >Mature_284_residues SQTFILTLSCPDRVGLVASLARLMEEHGCFIVTSRTFGDPQTNRFFARLVFSPPGNGGSLDAVKAAMAPLAAEIEADWQI RSSDEKLRTLLLVSKSDHCANTLLYAARRHELPIEITGIVSNHDSLKPAFAHWGLPWFHVPVTAASKPDAEALLYSIIEE TRSELVVLARYMQVLSEEACRRLEGRVINIHHSFLPGFKGAQPYHQAHARGVKVIGATAHYVTADLDEGPIITQATETID HTFTPEDMVETGRHIEGIALLRAVKAHAEHRIFLNSGRTVVFAR
Specific function: Produces Formate From Formyl-Tetrahydrofolate. Provides The Major Source Of Formate For The Purt-Dependent Synthesis Of 5'-Phosphoribosyl-N-Formylglycinamide (Fgar) During Aerobic Growth. Has A Role In Regulating The One-Carbon Pool. [C]
COG id: COG0788
COG function: function code F; Formyltetrahydrofolate hydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ACT domain [H]
Homologues:
Organism=Homo sapiens, GI4503915, Length=117, Percent_Identity=35.042735042735, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI209869995, Length=117, Percent_Identity=35.042735042735, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI209869993, Length=117, Percent_Identity=35.042735042735, Blast_Score=72, Evalue=7e-13, Organism=Escherichia coli, GI1787483, Length=281, Percent_Identity=38.0782918149466, Blast_Score=197, Evalue=6e-52, Organism=Caenorhabditis elegans, GI17567511, Length=172, Percent_Identity=30.8139534883721, Blast_Score=82, Evalue=4e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002376 - InterPro: IPR004810 [H]
Pfam domain/function: PF00551 Formyl_trans_N [H]
EC number: =3.5.1.10 [H]
Molecular weight: Translated: 31477; Mature: 31346
Theoretical pI: Translated: 6.93; Mature: 6.93
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQTFILTLSCPDRVGLVASLARLMEEHGCFIVTSRTFGDPQTNRFFARLVFSPPGNGGS CCCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCC LDAVKAAMAPLAAEIEADWQIRSSDEKLRTLLLVSKSDHCANTLLYAARRHELPIEITGI HHHHHHHHHHHHHHCCCCEEEECCHHHEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEE VSNHDSLKPAFAHWGLPWFHVPVTAASKPDAEALLYSIIEETRSELVVLARYMQVLSEEA ECCCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CRRLEGRVINIHHSFLPGFKGAQPYHQAHARGVKVIGATAHYVTADLDEGPIITQATETI HHHHCCEEEEEEHHHCCCCCCCCCHHHHHHCCEEEEEEEEEEEEEECCCCCEEEHHHHHH DHTFTPEDMVETGRHIEGIALLRAVKAHAEHRIFLNSGRTVVFAR CCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEC >Mature Secondary Structure SQTFILTLSCPDRVGLVASLARLMEEHGCFIVTSRTFGDPQTNRFFARLVFSPPGNGGS CCEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEEEECCCCCCCC LDAVKAAMAPLAAEIEADWQIRSSDEKLRTLLLVSKSDHCANTLLYAARRHELPIEITGI HHHHHHHHHHHHHHCCCCEEEECCHHHEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEEE VSNHDSLKPAFAHWGLPWFHVPVTAASKPDAEALLYSIIEETRSELVVLARYMQVLSEEA ECCCCCCCHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CRRLEGRVINIHHSFLPGFKGAQPYHQAHARGVKVIGATAHYVTADLDEGPIITQATETI HHHHCCEEEEEEHHHCCCCCCCCCHHHHHHCCEEEEEEEEEEEEEECCCCCEEEHHHHHH DHTFTPEDMVETGRHIEGIALLRAVKAHAEHRIFLNSGRTVVFAR CCCCCCHHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7543100 [H]