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The map label for this gene is yciR [C]

Identifier: 114797316

GI number: 114797316

Start: 1505868

End: 1507838

Strand: Reverse

Name: yciR [C]

Synonym: HNE_1479

Alternate gene names: 114797316

Gene position: 1507838-1505868 (Counterclockwise)

Preceding gene: 114800439

Following gene: 114798881

Centisome position: 40.7

GC content: 61.95

Gene sequence:

>1971_bases
ATGCCATATGTCCGTAAACTGCTCATTCTCTTCCTGGCGCAATACAGGCTCGGCCAACTGGATATGGATCTTGCGCGCGC
GCAGTTCCGCGAATTCGTTCATCAGGTTCCTCTTCTCTACTTTATTCTCTCCTGCAATGCCGTCGCCGTTGCTGCCGTCT
ACGGCCCGCTGGCGCCTGTCCTTCTCAGCTGCGTCTTCCCGTTTGTTCTCTGTACCGTGGCCGCTGTCAGGGGACTGTGG
TGGAGTCGCCGCCAGCAATCGAACTTTTCCGATACGGAGATAACCCGGCACATCCGCACGACCGGCCGGCTGGCCGTCCT
CATGACCGCCGGCTTCATGATCTGGGGTCTCCTGCTTTATCCGTATGGCGACCTTGAAGCCCGCGCGCATCTGACTTTTT
TTCTCGCCCTGACCCAGGTCAGTACCGTGTTCTGCCTGATGCCGCTGCGTTCGGCCGCCCTCTCGGTCGCGACTGTTGCC
ACGCCGCCTTTCTTTGTTTTTTTCCTGTTCGCCGATCAGGGCCGGATGATGCCGGAGGCGATCATGATGGCCGTCGTGGC
CGCAGGCATGATCAATATCCTCTACCGGCATAACGGGACGTTTTCGAAACTGATCAGCTCCAGGCGCATTCTGCGCCAGC
GCCAGCTGGATACCCAGCAGCTCAGCGACGAGAACCGCCGGATTGCGTTTACCGATCCCCTGAGCGGCCTGCCCAACCGG
CGCGCCATGCTTGCGCGCCTGGAAGCGCTGAGCGCCAGCGGCCCTTGCGGACCCGACAGGCTCGCCGTGGTCTTCATTGA
TCTTGACGGGTTCAAGGTCGTCAATGACCTGCACGGGCATGCATTCGGTGACAAGCTGGTCACCCAGGTGGGCGCGGCTC
TCAAATCCCTGATATCTGACGAGACCCTGCTGGTGCGGATGGGCGGGGATGAATTCGCCGCGCTGCTGGCCGGCCCGGAC
GCCGCCGCCAGAGCCGAACGGCTCGGTGTCCAGGCTCTCAACTGCCTGACCCTGCCCCTTACGGTCGATGGACGGCAGGT
ACGTATTGGCGCGAGCATAGGTATTGCGGTCGATGCAGCCGGGAACGCAACGCCGCTTGAACTGCTCCGGCAGGCCGACG
CGGCCATGTACGATGTCAAGTCTCACGGCAAGGGCGGTATCCGGGTGTTCGACCCTGGCCTGGACGCCGGCCGGGACTGG
CGCCTGCAGATCGAAAAAGAGCTGGCGCACGGCCTTGAGCAGGAAGAGTTCGATGTCGTCTACCAGCCCCTCGTCGATGC
GGCTGACTTCCGCATCTCAGGGGTAGAAGCCCTGCTTAGATGGCCGGGCCGGGCCGCCGGACCGCTGGCGCCTGACGCCT
TCATCGAAGTGGCCGAAGGCAGCGGGCTCATTCAGGCCCTTGGGATGTATGTTCTGGAGAAAGCCTGCCGGGACCTGCAC
GCGCTGCCGGACCTGAAACTGAGCGTCAATGTCTCTCCCACCCAGTTCAGTCATCCCGACTTTGCAAAACAGGTTGTGGC
GATCCTCCGGCAGACGCGGTTTTCTGCCCGCCGCCTGCAGCTTGAGATCACCGAGCGTCATCTCATCGATCATCCCGAAC
GGGCCCATGCAGCCATCGCCATGCTCAAGCGGCGGGGGGTAACGTTCGCGCTCGATGATTTCGGGACGGGGTTCACCAGC
CTCGCCTATCTCCAGTCCTACGGATTTGGCTGTGTGAAGATTAACCGCTCCCTCATCGGGAGGCTCGAAACGGATCCCAA
GGCCGGGTATCTGATCTCCGGGATCGTGATGATGGCCAGAGGGCTCGACATAAAGGTTGTCGCCGAAGGCGTGGAAACCG
AACGCCTTGCCCGGAAGCTTCAGATCGCCAGATGCGATCTCCTTCAGGGCTATTACTTCGGCCGTCCCGCTGCGATCGAC
CGACTCAAAGCCGATGTCAGCCTCGCCGGCCGGTCCACAGAAGCGGCCTGA

Upstream 100 bases:

>100_bases
GCATCTGACCGATCCGTGAAATTTCACAGATGTTCTTGAGGGGATCTTGGTCATTCCCATGCAGGAGTATGAATCGCTTT
CTCAACCCGACTGGCACCCT

Downstream 100 bases:

>100_bases
CCGGCGGGCCGCGCGCTTTCACCCAAACGGGCGCCCCCAATGCAGCAGGCCGGAAAGCTTCCCCGCTTCGGACCATCCCA
GAATGCGCACACAGTCGCCG

Product: GGDEF/EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 656; Mature: 655

Protein sequence:

>656_residues
MPYVRKLLILFLAQYRLGQLDMDLARAQFREFVHQVPLLYFILSCNAVAVAAVYGPLAPVLLSCVFPFVLCTVAAVRGLW
WSRRQQSNFSDTEITRHIRTTGRLAVLMTAGFMIWGLLLYPYGDLEARAHLTFFLALTQVSTVFCLMPLRSAALSVATVA
TPPFFVFFLFADQGRMMPEAIMMAVVAAGMINILYRHNGTFSKLISSRRILRQRQLDTQQLSDENRRIAFTDPLSGLPNR
RAMLARLEALSASGPCGPDRLAVVFIDLDGFKVVNDLHGHAFGDKLVTQVGAALKSLISDETLLVRMGGDEFAALLAGPD
AAARAERLGVQALNCLTLPLTVDGRQVRIGASIGIAVDAAGNATPLELLRQADAAMYDVKSHGKGGIRVFDPGLDAGRDW
RLQIEKELAHGLEQEEFDVVYQPLVDAADFRISGVEALLRWPGRAAGPLAPDAFIEVAEGSGLIQALGMYVLEKACRDLH
ALPDLKLSVNVSPTQFSHPDFAKQVVAILRQTRFSARRLQLEITERHLIDHPERAHAAIAMLKRRGVTFALDDFGTGFTS
LAYLQSYGFGCVKINRSLIGRLETDPKAGYLISGIVMMARGLDIKVVAEGVETERLARKLQIARCDLLQGYYFGRPAAID
RLKADVSLAGRSTEAA

Sequences:

>Translated_656_residues
MPYVRKLLILFLAQYRLGQLDMDLARAQFREFVHQVPLLYFILSCNAVAVAAVYGPLAPVLLSCVFPFVLCTVAAVRGLW
WSRRQQSNFSDTEITRHIRTTGRLAVLMTAGFMIWGLLLYPYGDLEARAHLTFFLALTQVSTVFCLMPLRSAALSVATVA
TPPFFVFFLFADQGRMMPEAIMMAVVAAGMINILYRHNGTFSKLISSRRILRQRQLDTQQLSDENRRIAFTDPLSGLPNR
RAMLARLEALSASGPCGPDRLAVVFIDLDGFKVVNDLHGHAFGDKLVTQVGAALKSLISDETLLVRMGGDEFAALLAGPD
AAARAERLGVQALNCLTLPLTVDGRQVRIGASIGIAVDAAGNATPLELLRQADAAMYDVKSHGKGGIRVFDPGLDAGRDW
RLQIEKELAHGLEQEEFDVVYQPLVDAADFRISGVEALLRWPGRAAGPLAPDAFIEVAEGSGLIQALGMYVLEKACRDLH
ALPDLKLSVNVSPTQFSHPDFAKQVVAILRQTRFSARRLQLEITERHLIDHPERAHAAIAMLKRRGVTFALDDFGTGFTS
LAYLQSYGFGCVKINRSLIGRLETDPKAGYLISGIVMMARGLDIKVVAEGVETERLARKLQIARCDLLQGYYFGRPAAID
RLKADVSLAGRSTEAA
>Mature_655_residues
PYVRKLLILFLAQYRLGQLDMDLARAQFREFVHQVPLLYFILSCNAVAVAAVYGPLAPVLLSCVFPFVLCTVAAVRGLWW
SRRQQSNFSDTEITRHIRTTGRLAVLMTAGFMIWGLLLYPYGDLEARAHLTFFLALTQVSTVFCLMPLRSAALSVATVAT
PPFFVFFLFADQGRMMPEAIMMAVVAAGMINILYRHNGTFSKLISSRRILRQRQLDTQQLSDENRRIAFTDPLSGLPNRR
AMLARLEALSASGPCGPDRLAVVFIDLDGFKVVNDLHGHAFGDKLVTQVGAALKSLISDETLLVRMGGDEFAALLAGPDA
AARAERLGVQALNCLTLPLTVDGRQVRIGASIGIAVDAAGNATPLELLRQADAAMYDVKSHGKGGIRVFDPGLDAGRDWR
LQIEKELAHGLEQEEFDVVYQPLVDAADFRISGVEALLRWPGRAAGPLAPDAFIEVAEGSGLIQALGMYVLEKACRDLHA
LPDLKLSVNVSPTQFSHPDFAKQVVAILRQTRFSARRLQLEITERHLIDHPERAHAAIAMLKRRGVTFALDDFGTGFTSL
AYLQSYGFGCVKINRSLIGRLETDPKAGYLISGIVMMARGLDIKVVAEGVETERLARKLQIARCDLLQGYYFGRPAAIDR
LKADVSLAGRSTEAA

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=415, Percent_Identity=32.0481927710843, Blast_Score=213, Evalue=4e-56,
Organism=Escherichia coli, GI87081921, Length=412, Percent_Identity=29.8543689320388, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI226510982, Length=441, Percent_Identity=30.8390022675737, Blast_Score=182, Evalue=9e-47,
Organism=Escherichia coli, GI1788502, Length=245, Percent_Identity=33.469387755102, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=251, Percent_Identity=33.4661354581673, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI87081980, Length=244, Percent_Identity=35.2459016393443, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1786507, Length=239, Percent_Identity=33.0543933054393, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787055, Length=243, Percent_Identity=32.5102880658436, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI1790496, Length=240, Percent_Identity=30, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI87081743, Length=232, Percent_Identity=30.6034482758621, Blast_Score=121, Evalue=1e-28,
Organism=Escherichia coli, GI1788849, Length=467, Percent_Identity=23.5546038543897, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87082096, Length=421, Percent_Identity=24.2280285035629, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI1788381, Length=223, Percent_Identity=33.1838565022422, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI1787262, Length=173, Percent_Identity=34.1040462427746, Blast_Score=86, Evalue=1e-17,
Organism=Escherichia coli, GI87081977, Length=190, Percent_Identity=32.6315789473684, Blast_Score=85, Evalue=2e-17,
Organism=Escherichia coli, GI1788956, Length=202, Percent_Identity=29.7029702970297, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI87082007, Length=166, Percent_Identity=30.7228915662651, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=29.5454545454545, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI1786584, Length=175, Percent_Identity=30.2857142857143, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787410, Length=218, Percent_Identity=26.1467889908257, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1787802, Length=150, Percent_Identity=30, Blast_Score=62, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 72011; Mature: 71880

Theoretical pI: Translated: 8.60; Mature: 8.60

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYVRKLLILFLAQYRLGQLDMDLARAQFREFVHQVPLLYFILSCNAVAVAAVYGPLAPV
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LLSCVFPFVLCTVAAVRGLWWSRRQQSNFSDTEITRHIRTTGRLAVLMTAGFMIWGLLLY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
PYGDLEARAHLTFFLALTQVSTVFCLMPLRSAALSVATVATPPFFVFFLFADQGRMMPEA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHH
IMMAVVAAGMINILYRHNGTFSKLISSRRILRQRQLDTQQLSDENRRIAFTDPLSGLPNR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCCH
RAMLARLEALSASGPCGPDRLAVVFIDLDGFKVVNDLHGHAFGDKLVTQVGAALKSLISD
HHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
ETLLVRMGGDEFAALLAGPDAAARAERLGVQALNCLTLPLTVDGRQVRIGASIGIAVDAA
CEEEEEECCCCEEHEEECCCHHHHHHHHCHHHHHEEEEEEEECCCEEEEECEEEEEEECC
GNATPLELLRQADAAMYDVKSHGKGGIRVFDPGLDAGRDWRLQIEKELAHGLEQEEFDVV
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEHHHHHCCCCCHHHHHH
YQPLVDAADFRISGVEALLRWPGRAAGPLAPDAFIEVAEGSGLIQALGMYVLEKACRDLH
HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHH
ALPDLKLSVNVSPTQFSHPDFAKQVVAILRQTRFSARRLQLEITERHLIDHPERAHAAIA
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHHCCCCHHHHHHHH
MLKRRGVTFALDDFGTGFTSLAYLQSYGFGCVKINRSLIGRLETDPKAGYLISGIVMMAR
HHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHCCCCCCCCCCHHHHHHHHHHC
GLDIKVVAEGVETERLARKLQIARCDLLQGYYFGRPAAIDRLKADVSLAGRSTEAA
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
PYVRKLLILFLAQYRLGQLDMDLARAQFREFVHQVPLLYFILSCNAVAVAAVYGPLAPV
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LLSCVFPFVLCTVAAVRGLWWSRRQQSNFSDTEITRHIRTTGRLAVLMTAGFMIWGLLLY
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
PYGDLEARAHLTFFLALTQVSTVFCLMPLRSAALSVATVATPPFFVFFLFADQGRMMPEA
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHH
IMMAVVAAGMINILYRHNGTFSKLISSRRILRQRQLDTQQLSDENRRIAFTDPLSGLPNR
HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHCCCCCEEEEECCCCCCCCH
RAMLARLEALSASGPCGPDRLAVVFIDLDGFKVVNDLHGHAFGDKLVTQVGAALKSLISD
HHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
ETLLVRMGGDEFAALLAGPDAAARAERLGVQALNCLTLPLTVDGRQVRIGASIGIAVDAA
CEEEEEECCCCEEHEEECCCHHHHHHHHCHHHHHEEEEEEEECCCEEEEECEEEEEEECC
GNATPLELLRQADAAMYDVKSHGKGGIRVFDPGLDAGRDWRLQIEKELAHGLEQEEFDVV
CCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCEEEEHHHHHCCCCCHHHHHH
YQPLVDAADFRISGVEALLRWPGRAAGPLAPDAFIEVAEGSGLIQALGMYVLEKACRDLH
HHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHEEECCCCCHHHHHHHHHHHHHHHHHH
ALPDLKLSVNVSPTQFSHPDFAKQVVAILRQTRFSARRLQLEITERHLIDHPERAHAAIA
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEEHHHHHCCCCHHHHHHHH
MLKRRGVTFALDDFGTGFTSLAYLQSYGFGCVKINRSLIGRLETDPKAGYLISGIVMMAR
HHHHCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHCCCCCCCCCCHHHHHHHHHHC
GLDIKVVAEGVETERLARKLQIARCDLLQGYYFGRPAAIDRLKADVSLAGRSTEAA
CCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]