BacMap

Definition	Hyphomonas neptunium ATCC 15444 chromosome, complete genome.
Accession	NC_008358
Length	3,705,021

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The map label for this gene is ybbO [H]

Identifier: 114797298

GI number: 114797298

Start: 3503462

End: 3504346

Strand: Direct

Name: ybbO [H]

Synonym: HNE_3356

Alternate gene names: 114797298

Gene position: 3503462-3504346 (Clockwise)

Preceding gene: 114800017

Following gene: 114798306

Centisome position: 94.56

GC content: 64.63

Gene sequence:

>885_bases
ATGACCGATCTGACCGCGCCTGCCCTCGCCCGTTCCCTGCTGGTTACCGGCGCCTCGACCGGCATCGGTGAGGCCGCCGC
TCGCCACATGGCCGCGCGCGGCTGGACGGTATTTGCCGGGGTCCGCTCGGAGAAGGATGCCAGCGCGCTGCGCCAGGGCG
CCGCCGGAGACCTCCGCCCGATCATTCTGGACGTCACCAAGCCTGAACAGGTGGAGGGCGCTGTGGCCACAATCAGCACC
GCCCTGGGCAATCGCCGTCTCTCCGGCCTCCTAAACAATGCGGGTATCGCCAAGATGGGGCCGCTGGCGATCCAGCCGCT
GGAAGATTTCGAAGCGCATTTCACCGTCAACGTGTTCGGTATGCTGCGCGTGACGCAAGCCTTCGTACCCCTGCTCGGCG
GCGACCCGGCCCGTGAAGGCGCCCCCGGCCGCATCGTCACCATCACCTCGGTTGGCGGCAAGATCGCCGCGCCGTTCCTC
GGCGCCTACACCGCCACTAAACATGCCAATGAAGCGATGACCGACACCCTGCGCCGGGAACTCGCCATCTATGGCATCGA
CGCCATCGCCATCGGCCCCGGATCGGTCCGCACGCCGATCTGGGACAAGGCGGAGAAGGACAATGAAGGCGGGCTCTATG
CGGGAAGCGATTGGGCCGCTTCCCTCAACATCTTCGAAGAAACAATGCTGAAAGGCGGCAAGACCGGATTGCCGCCCCAG
ACTATTGCCGAAGTCGTCGAAGACGCGCTCAGCAATTCCAGCCCCAAGGCGCGTTATGCCCCGGTACCCGACAAGCTGAC
CAATTTCACCATCGCCAGCCGCCTGCCCAAACGCTGGCTCGACAAGGTGTTCATCAAGCGCTTCGGCCTGCAGAAGAAAG
ACTGA

Upstream 100 bases:

>100_bases
AGATCACACGGCTGCGCCAGACAAAACCGAAATTGACCGTCATTGAGGGCGGCAGCAAAAAAACTGAAAACTGACAGGCG
TTTCGCACGTATAGTGAGAC

Downstream 100 bases:

>100_bases
CACTCCCGTCAACTTTCGCCCTTGACGCCCCTCGCGGAAAGGCGACCCATGTCGCCCGAAACGGGAGGAACAAACATGGC
AGATCTCAAGGGCAAAGTGG

Product: short chain dehydrogenase/reductase family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTDLTAPALARSLLVTGASTGIGEAAARHMAARGWTVFAGVRSEKDASALRQGAAGDLRPIILDVTKPEQVEGAVATIST
ALGNRRLSGLLNNAGIAKMGPLAIQPLEDFEAHFTVNVFGMLRVTQAFVPLLGGDPAREGAPGRIVTITSVGGKIAAPFL
GAYTATKHANEAMTDTLRRELAIYGIDAIAIGPGSVRTPIWDKAEKDNEGGLYAGSDWAASLNIFEETMLKGGKTGLPPQ
TIAEVVEDALSNSSPKARYAPVPDKLTNFTIASRLPKRWLDKVFIKRFGLQKKD

Sequences:

>Translated_294_residues
MTDLTAPALARSLLVTGASTGIGEAAARHMAARGWTVFAGVRSEKDASALRQGAAGDLRPIILDVTKPEQVEGAVATIST
ALGNRRLSGLLNNAGIAKMGPLAIQPLEDFEAHFTVNVFGMLRVTQAFVPLLGGDPAREGAPGRIVTITSVGGKIAAPFL
GAYTATKHANEAMTDTLRRELAIYGIDAIAIGPGSVRTPIWDKAEKDNEGGLYAGSDWAASLNIFEETMLKGGKTGLPPQ
TIAEVVEDALSNSSPKARYAPVPDKLTNFTIASRLPKRWLDKVFIKRFGLQKKD
>Mature_293_residues
TDLTAPALARSLLVTGASTGIGEAAARHMAARGWTVFAGVRSEKDASALRQGAAGDLRPIILDVTKPEQVEGAVATISTA
LGNRRLSGLLNNAGIAKMGPLAIQPLEDFEAHFTVNVFGMLRVTQAFVPLLGGDPAREGAPGRIVTITSVGGKIAAPFLG
AYTATKHANEAMTDTLRRELAIYGIDAIAIGPGSVRTPIWDKAEKDNEGGLYAGSDWAASLNIFEETMLKGGKTGLPPQT
IAEVVEDALSNSSPKARYAPVPDKLTNFTIASRLPKRWLDKVFIKRFGLQKKD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI40548397, Length=293, Percent_Identity=29.6928327645051, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI214010158, Length=293, Percent_Identity=29.6928327645051, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI214010156, Length=293, Percent_Identity=29.6928327645051, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI22758144, Length=293, Percent_Identity=29.6928327645051, Blast_Score=127, Evalue=1e-29,
Organism=Homo sapiens, GI19743808, Length=294, Percent_Identity=30.952380952381, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI150247226, Length=287, Percent_Identity=29.616724738676, Blast_Score=121, Evalue=9e-28,
Organism=Homo sapiens, GI4504503, Length=303, Percent_Identity=29.7029702970297, Blast_Score=117, Evalue=9e-27,
Organism=Homo sapiens, GI22507405, Length=295, Percent_Identity=26.4406779661017, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI44680136, Length=305, Percent_Identity=28.1967213114754, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI44680133, Length=305, Percent_Identity=28.1967213114754, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI17738292, Length=305, Percent_Identity=28.1967213114754, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI50726952, Length=291, Percent_Identity=30.2405498281787, Blast_Score=105, Evalue=6e-23,
Organism=Homo sapiens, GI119392083, Length=300, Percent_Identity=29.3333333333333, Blast_Score=102, Evalue=3e-22,
Organism=Homo sapiens, GI223718074, Length=266, Percent_Identity=28.5714285714286, Blast_Score=82, Evalue=7e-16,
Organism=Homo sapiens, GI7657478, Length=271, Percent_Identity=27.6752767527675, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI20149619, Length=197, Percent_Identity=28.9340101522843, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=28.8659793814433, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI142976729, Length=192, Percent_Identity=28.125, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI7705925, Length=200, Percent_Identity=29.5, Blast_Score=68, Evalue=9e-12,
Organism=Homo sapiens, GI109715829, Length=210, Percent_Identity=31.9047619047619, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI1786701, Length=281, Percent_Identity=31.6725978647687, Blast_Score=120, Evalue=1e-28,
Organism=Escherichia coli, GI87082100, Length=194, Percent_Identity=35.0515463917526, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787335, Length=201, Percent_Identity=30.3482587064677, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788459, Length=194, Percent_Identity=27.8350515463918, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI115534660, Length=298, Percent_Identity=32.5503355704698, Blast_Score=144, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI17557780, Length=290, Percent_Identity=26.8965517241379, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI193210355, Length=280, Percent_Identity=25.7142857142857, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI32563809, Length=300, Percent_Identity=26.6666666666667, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17507613, Length=300, Percent_Identity=26.6666666666667, Blast_Score=84, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI71997402, Length=266, Percent_Identity=25.9398496240602, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17570069, Length=256, Percent_Identity=25.390625, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17508895, Length=200, Percent_Identity=28, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=255, Percent_Identity=27.4509803921569, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71994604, Length=201, Percent_Identity=28.3582089552239, Blast_Score=64, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=281, Percent_Identity=29.5373665480427, Blast_Score=84, Evalue=4e-17,
Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=30.5, Blast_Score=73, Evalue=6e-14,
Organism=Saccharomyces cerevisiae, GI6319635, Length=182, Percent_Identity=28.021978021978, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24651139, Length=292, Percent_Identity=28.4246575342466, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24643142, Length=190, Percent_Identity=31.5789473684211, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI20128793, Length=284, Percent_Identity=25.7042253521127, Blast_Score=82, Evalue=5e-16,
Organism=Drosophila melanogaster, GI28571526, Length=203, Percent_Identity=33.9901477832512, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI21358495, Length=270, Percent_Identity=27.4074074074074, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI19922066, Length=305, Percent_Identity=24.2622950819672, Blast_Score=78, Evalue=8e-15,
Organism=Drosophila melanogaster, GI281364494, Length=208, Percent_Identity=33.1730769230769, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI281364892, Length=173, Percent_Identity=30.0578034682081, Blast_Score=74, Evalue=9e-14,
Organism=Drosophila melanogaster, GI24648693, Length=218, Percent_Identity=33.0275229357798, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI21355889, Length=218, Percent_Identity=33.0275229357798, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007236, Length=201, Percent_Identity=31.3432835820896, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI28571387, Length=202, Percent_Identity=31.1881188118812, Blast_Score=68, Evalue=8e-12,
Organism=Drosophila melanogaster, GI23397609, Length=195, Percent_Identity=31.7948717948718, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI17737361, Length=197, Percent_Identity=30.9644670050761, Blast_Score=65, Evalue=7e-11,
Organism=Drosophila melanogaster, GI24639444, Length=188, Percent_Identity=29.7872340425532, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI21357041, Length=203, Percent_Identity=28.0788177339901, Blast_Score=64, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 31089; Mature: 30958

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDLTAPALARSLLVTGASTGIGEAAARHMAARGWTVFAGVRSEKDASALRQGAAGDLRP
CCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCCCCE
IILDVTKPEQVEGAVATISTALGNRRLSGLLNNAGIAKMGPLAIQPLEDFEAHFTVNVFG
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHCCCEEEEHHHH
MLRVTQAFVPLLGGDPAREGAPGRIVTITSVGGKIAAPFLGAYTATKHANEAMTDTLRRE
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAIYGIDAIAIGPGSVRTPIWDKAEKDNEGGLYAGSDWAASLNIFEETMLKGGKTGLPPQ
HHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCHH
TIAEVVEDALSNSSPKARYAPVPDKLTNFTIASRLPKRWLDKVFIKRFGLQKKD
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TDLTAPALARSLLVTGASTGIGEAAARHMAARGWTVFAGVRSEKDASALRQGAAGDLRP
CCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCCCCE
IILDVTKPEQVEGAVATISTALGNRRLSGLLNNAGIAKMGPLAIQPLEDFEAHFTVNVFG
EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHCCCEEEEHHHH
MLRVTQAFVPLLGGDPAREGAPGRIVTITSVGGKIAAPFLGAYTATKHANEAMTDTLRRE
HHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LAIYGIDAIAIGPGSVRTPIWDKAEKDNEGGLYAGSDWAASLNIFEETMLKGGKTGLPPQ
HHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCHH
TIAEVVEDALSNSSPKARYAPVPDKLTNFTIASRLPKRWLDKVFIKRFGLQKKD
HHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]