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The map label for this gene is vacJ [C]

Identifier: 114797269

GI number: 114797269

Start: 2181226

End: 2181993

Strand: Direct

Name: vacJ [C]

Synonym: HNE_2105

Alternate gene names: 114797269

Gene position: 2181226-2181993 (Clockwise)

Preceding gene: 114797194

Following gene: 114798048

Centisome position: 58.87

GC content: 58.46

Gene sequence:

>768_bases
ATGAAAACCGCCCTCCCCGGTGCCGCGCTGCTTGCGGTTGCACTTGCCGCCTGTGCCTCGACACCTGCTGCAGGATCTAC
TGATATTGCTGACCCTTATGAAGGCTTCAATCGCAAGATGTACGCCTTTAACAACGGGTTGGATAAGTACGCCCTCGACC
CGGCCGCAACCGCCTACAAGACCGTAACGCCGGAATTCGCCCGTGACCGGGTTGGGGATTTCCTGTCCAACCTTCGCGGC
CCGGTCGTCTTCGCAAACGACGTCCTCCAAGGTGAGGCCAAACGCGCCGGAACGACGTTCGCGCGGTTTGGAATCAACAC
GACTATTGGCGTTCTGGGCCTCTGGGACCCGGCATCGGAAATCGGCCTTGAGCGTCACCGGGAAGATTTCGGCCAGACGC
TGGCCGTCTGGGGCGTAGAGAGCGGGCCTTATATCGTGATGCCGGTTCTTGGCCCCACGACGCCGCGCGACCTGCTGGGA
TTCGGTGTGGACCGCGCGATCGACCCTCTGACATGGGTTCAGCTCGATAATGATTCTGATTCTGATCTCGCCATCCGCGC
CGGTCTCGGCATCGTTGGCGCCCTCAATGCCCGCGTGCGGCTGGAAGATCAGATCAACACGCTCAATGCCCAACCCGAAC
CCTATATTGCCCTTAGACGGATTTATTCATCTTCGCGTCAGGCGGAGATCCTTAATGGAAAGGTCGATGACGAGGCCGCC
TATGATGATCTCCCCGATTTCGACGAATTTGAAGACTATGAAGAGTAA

Upstream 100 bases:

>100_bases
CTTATCGCGATCACCGAAGCATAGGCAGGTCAACAGCTGATGACTTACTCCTCGCTAACCTGTCCCTGCCATATGTCGTC
TCTTTAGGAACATTGACTGC

Downstream 100 bases:

>100_bases
GTCCCGGCCGCCTGAGAAAAGGACTATGACCATGAAACGTTTCATTCTCCCGGCTGTCATGGCCGCCACAATGACCGTAA
GCGCCCTGCCCGCTTTTGCG

Product: putative lipoprotein VacJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKTALPGAALLAVALAACASTPAAGSTDIADPYEGFNRKMYAFNNGLDKYALDPAATAYKTVTPEFARDRVGDFLSNLRG
PVVFANDVLQGEAKRAGTTFARFGINTTIGVLGLWDPASEIGLERHREDFGQTLAVWGVESGPYIVMPVLGPTTPRDLLG
FGVDRAIDPLTWVQLDNDSDSDLAIRAGLGIVGALNARVRLEDQINTLNAQPEPYIALRRIYSSSRQAEILNGKVDDEAA
YDDLPDFDEFEDYEE

Sequences:

>Translated_255_residues
MKTALPGAALLAVALAACASTPAAGSTDIADPYEGFNRKMYAFNNGLDKYALDPAATAYKTVTPEFARDRVGDFLSNLRG
PVVFANDVLQGEAKRAGTTFARFGINTTIGVLGLWDPASEIGLERHREDFGQTLAVWGVESGPYIVMPVLGPTTPRDLLG
FGVDRAIDPLTWVQLDNDSDSDLAIRAGLGIVGALNARVRLEDQINTLNAQPEPYIALRRIYSSSRQAEILNGKVDDEAA
YDDLPDFDEFEDYEE
>Mature_255_residues
MKTALPGAALLAVALAACASTPAAGSTDIADPYEGFNRKMYAFNNGLDKYALDPAATAYKTVTPEFARDRVGDFLSNLRG
PVVFANDVLQGEAKRAGTTFARFGINTTIGVLGLWDPASEIGLERHREDFGQTLAVWGVESGPYIVMPVLGPTTPRDLLG
FGVDRAIDPLTWVQLDNDSDSDLAIRAGLGIVGALNARVRLEDQINTLNAQPEPYIALRRIYSSSRQAEILNGKVDDEAA
YDDLPDFDEFEDYEE

Specific function: Unknown

COG id: COG2853

COG function: function code M; Surface lipoprotein

Gene ontology:

Cell location: Attached To The Outer Membrane By A Lipid Anchor [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaA family [H]

Homologues:

Organism=Escherichia coli, GI1788688, Length=260, Percent_Identity=33.4615384615385, Blast_Score=116, Evalue=1e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007428 [H]

Pfam domain/function: PF04333 VacJ [H]

EC number: NA

Molecular weight: Translated: 27620; Mature: 27620

Theoretical pI: Translated: 4.15; Mature: 4.15

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTALPGAALLAVALAACASTPAAGSTDIADPYEGFNRKMYAFNNGLDKYALDPAATAYK
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEEECCCCCHHCCCCHHHHHH
TVTPEFARDRVGDFLSNLRGPVVFANDVLQGEAKRAGTTFARFGINTTIGVLGLWDPASE
HCCHHHHHHHHHHHHHHCCCCEEEECHHHHCCHHHCCCHHHHHCCCCEEEEEECCCCHHH
IGLERHREDFGQTLAVWGVESGPYIVMPVLGPTTPRDLLGFGVDRAIDPLTWVQLDNDSD
HHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCCHHHHHHCCHHHHCCCEEEEEECCCCC
SDLAIRAGLGIVGALNARVRLEDQINTLNAQPEPYIALRRIYSSSRQAEILNGKVDDEAA
CCEEEECCCCEEEECCCEEEEHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCC
YDDLPDFDEFEDYEE
CCCCCCCCCCCCCCC
>Mature Secondary Structure
MKTALPGAALLAVALAACASTPAAGSTDIADPYEGFNRKMYAFNNGLDKYALDPAATAYK
CCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCEEEEECCCCCHHCCCCHHHHHH
TVTPEFARDRVGDFLSNLRGPVVFANDVLQGEAKRAGTTFARFGINTTIGVLGLWDPASE
HCCHHHHHHHHHHHHHHCCCCEEEECHHHHCCHHHCCCHHHHHCCCCEEEEEECCCCHHH
IGLERHREDFGQTLAVWGVESGPYIVMPVLGPTTPRDLLGFGVDRAIDPLTWVQLDNDSD
HHHHHHHHHHCCEEEEEEECCCCEEEEECCCCCCHHHHHHCCHHHHCCCEEEEEECCCCC
SDLAIRAGLGIVGALNARVRLEDQINTLNAQPEPYIALRRIYSSSRQAEILNGKVDDEAA
CCEEEECCCCEEEECCCEEEEHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCC
YDDLPDFDEFEDYEE
CCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA