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The map label for this gene is yddU [C]

Identifier: 114797194

GI number: 114797194

Start: 2173180

End: 2174916

Strand: Direct

Name: yddU [C]

Synonym: HNE_2099

Alternate gene names: 114797194

Gene position: 2173180-2174916 (Clockwise)

Preceding gene: 114798307

Following gene: 114797269

Centisome position: 58.65

GC content: 60.97

Gene sequence:

>1737_bases
ATGCAATTTGGTGAGCTTGATGTTCAGAACGTTCCCGCGCTCCGGGCCGACGGACTGTGCCGCGACGCAATCGATTTCTT
CGTCGCGAACCCGAGACTGAGGCTCATCGCTGCCGTGGACGCAACCGGACGTCCGGCCGGAGCGCTCACGCGAACGAAAA
TTATCTCCAAAGCTGCAAGCCAGTTTGGCAGGGCGCTCTATGACGCCCGGCCGCTTGCCGAATTCATGGAGCCGCCCCGC
TTTGTCGTCGGCACAGACCAGCAAGTTGCTGACATCGCCAACCAGCTTGCCGCGACTGACCTGACCAATGCGCCTGACGG
CTACATTCTGGTGGATCATCTTGGCCGCTATGCCGGGATCGTGGATGGACTGTCCGTACTCCGTGCACTCCTCAAGCTGA
ACATGCAGCTTGTAGATGAACTCAATTCCGAAGTGGCAGTCCGCTGCGAAGCCGAAAAGGAAGCCAGGCGCCTTGCCGAT
ACCGACACGTTGACCGGCCTGAACAATCGCAGGCTGTTCATCGAAGAGGCAGACCGCTTCGTTCAGCTCGGCACGCCCGC
CTGGCTCATCTATGTGGATCTCGACCGGTTCAAGTATCTCAATGACAAATACGGCCATGCTGTCGGGGATGATGCCCTGA
AGGTGATCGCCGGACGAATTCAGGACGGGTGGCCCGGCGCACTGGTCGCAAGGCTGGGGGGCGACGAATTCGGGATGCTG
ATTGATGCGGCGCGGCTCGAAGGAAGCCTCGACGAAGAGTTGATTCGGCTGCACGCCTCACTCTGCGCGCCCTTCCCATC
CAAGCCCGGCGCCGTCAGCGTTGGCGCGTCAATCGGCGCGGCGGAATTTCCTGGCGATGCCGCCACACGGTCCGAATGGC
TCCATGCAGCCGACAAAGCCATGCAGCGCGCCAAGTCCGATCATGGCGGCGTGCGTCTGTTTGATCCCACAATCGACATT
GCCGAGGCCAAGCAAGCCCGCCTCACGGAGTCCCTGCAGGCCGCCGTTTCGGAAAACCAGATACGTCCGGTATTCCAGCC
TTTCTATTCGGTCGCAAACGGACAACTGGCGGGATATGAAGTGCTGGCGCGCTGGAATGGGCCCGACATCGGGTTCATAC
CCGGCCCCGGTGAATTCATTCCCCTTCTCGAGCGCCTCGGTCTGATCGATGAGATGTTCTGGGGCGTTGCTGAGCAGGCC
CTGCTTGCCTGCCGGAAAATGCCTTCCCACCTGAAGATCGCGCTCAATGTTTCCCCCATCCAGTTTGCCAACCGCCTATT
CCCGGCCCGGCTGGCCGCGCTCGCGTCCCGTATCGGTGTGCAGTGCAATCAGCTGGAAATTGAGATCACCGAAACGGCCA
TGTTCCGCGACATGACGCACACAGTATCGGTGCTCCGTGATCTGAGCGATATGGGGATGTCCATCGCCCTTGATGATTTC
GGGACCGGCTATTCCTCCCTGACATTGGTGAAGGAGCTACCGCTCACCAAACTCAAGATCGACAAGTCCTTCATCCAGTC
GGCGCAGAACTCGCCAAGCTCCGACAAGATCGTGTCGGCCGCCATTGGCCTCAGCCAGGCCCTGAACATCCTATGCTGCG
CAGAGGGCGTTGAAGACGCTGCAACGCTCGAACGCCTCAGGGGCATGAACTGCGATCTCGCGCAGGGCTTCCTGCTCGGC
AGGCCAGCGGCAGTCCTGGGTGGAGGCCGCAGCCAGGCCCTGAGCGCCGCCGGCTAG

Upstream 100 bases:

>100_bases
TGTTATTTCAAGCACTTAGTAAACCAGGAAATTTACCTTTCCCCGCTATGCACATTCCAAGACGCGCTGCAGCGCGCACT
ACAGAACACAAGGATATGGC

Downstream 100 bases:

>100_bases
GCTACTGCATCCGCCATCACGAATGGATCATATGAGAGGATCGGCGCCAGCCAGCGTTCGGCCATGCGCGTTTCCCAGCC
CTTGCGCGCGGCATAGTCAG

Product: putative diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 578; Mature: 578

Protein sequence:

>578_residues
MQFGELDVQNVPALRADGLCRDAIDFFVANPRLRLIAAVDATGRPAGALTRTKIISKAASQFGRALYDARPLAEFMEPPR
FVVGTDQQVADIANQLAATDLTNAPDGYILVDHLGRYAGIVDGLSVLRALLKLNMQLVDELNSEVAVRCEAEKEARRLAD
TDTLTGLNNRRLFIEEADRFVQLGTPAWLIYVDLDRFKYLNDKYGHAVGDDALKVIAGRIQDGWPGALVARLGGDEFGML
IDAARLEGSLDEELIRLHASLCAPFPSKPGAVSVGASIGAAEFPGDAATRSEWLHAADKAMQRAKSDHGGVRLFDPTIDI
AEAKQARLTESLQAAVSENQIRPVFQPFYSVANGQLAGYEVLARWNGPDIGFIPGPGEFIPLLERLGLIDEMFWGVAEQA
LLACRKMPSHLKIALNVSPIQFANRLFPARLAALASRIGVQCNQLEIEITETAMFRDMTHTVSVLRDLSDMGMSIALDDF
GTGYSSLTLVKELPLTKLKIDKSFIQSAQNSPSSDKIVSAAIGLSQALNILCCAEGVEDAATLERLRGMNCDLAQGFLLG
RPAAVLGGGRSQALSAAG

Sequences:

>Translated_578_residues
MQFGELDVQNVPALRADGLCRDAIDFFVANPRLRLIAAVDATGRPAGALTRTKIISKAASQFGRALYDARPLAEFMEPPR
FVVGTDQQVADIANQLAATDLTNAPDGYILVDHLGRYAGIVDGLSVLRALLKLNMQLVDELNSEVAVRCEAEKEARRLAD
TDTLTGLNNRRLFIEEADRFVQLGTPAWLIYVDLDRFKYLNDKYGHAVGDDALKVIAGRIQDGWPGALVARLGGDEFGML
IDAARLEGSLDEELIRLHASLCAPFPSKPGAVSVGASIGAAEFPGDAATRSEWLHAADKAMQRAKSDHGGVRLFDPTIDI
AEAKQARLTESLQAAVSENQIRPVFQPFYSVANGQLAGYEVLARWNGPDIGFIPGPGEFIPLLERLGLIDEMFWGVAEQA
LLACRKMPSHLKIALNVSPIQFANRLFPARLAALASRIGVQCNQLEIEITETAMFRDMTHTVSVLRDLSDMGMSIALDDF
GTGYSSLTLVKELPLTKLKIDKSFIQSAQNSPSSDKIVSAAIGLSQALNILCCAEGVEDAATLERLRGMNCDLAQGFLLG
RPAAVLGGGRSQALSAAG
>Mature_578_residues
MQFGELDVQNVPALRADGLCRDAIDFFVANPRLRLIAAVDATGRPAGALTRTKIISKAASQFGRALYDARPLAEFMEPPR
FVVGTDQQVADIANQLAATDLTNAPDGYILVDHLGRYAGIVDGLSVLRALLKLNMQLVDELNSEVAVRCEAEKEARRLAD
TDTLTGLNNRRLFIEEADRFVQLGTPAWLIYVDLDRFKYLNDKYGHAVGDDALKVIAGRIQDGWPGALVARLGGDEFGML
IDAARLEGSLDEELIRLHASLCAPFPSKPGAVSVGASIGAAEFPGDAATRSEWLHAADKAMQRAKSDHGGVRLFDPTIDI
AEAKQARLTESLQAAVSENQIRPVFQPFYSVANGQLAGYEVLARWNGPDIGFIPGPGEFIPLLERLGLIDEMFWGVAEQA
LLACRKMPSHLKIALNVSPIQFANRLFPARLAALASRIGVQCNQLEIEITETAMFRDMTHTVSVLRDLSDMGMSIALDDF
GTGYSSLTLVKELPLTKLKIDKSFIQSAQNSPSSDKIVSAAIGLSQALNILCCAEGVEDAATLERLRGMNCDLAQGFLLG
RPAAVLGGGRSQALSAAG

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=426, Percent_Identity=29.3427230046948, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI1787541, Length=419, Percent_Identity=30.0715990453461, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI226510982, Length=297, Percent_Identity=32.996632996633, Blast_Score=124, Evalue=2e-29,
Organism=Escherichia coli, GI87081845, Length=247, Percent_Identity=32.7935222672065, Blast_Score=121, Evalue=2e-28,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=31.5126050420168, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=30.379746835443, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI1788502, Length=235, Percent_Identity=29.7872340425532, Blast_Score=109, Evalue=4e-25,
Organism=Escherichia coli, GI87081743, Length=235, Percent_Identity=32.3404255319149, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1788849, Length=243, Percent_Identity=29.2181069958848, Blast_Score=105, Evalue=6e-24,
Organism=Escherichia coli, GI1787055, Length=253, Percent_Identity=28.0632411067194, Blast_Score=102, Evalue=1e-22,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=30.0813008130081, Blast_Score=100, Evalue=3e-22,
Organism=Escherichia coli, GI87082096, Length=244, Percent_Identity=27.4590163934426, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1786584, Length=163, Percent_Identity=30.0613496932515, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787262, Length=185, Percent_Identity=32.972972972973, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI87081881, Length=162, Percent_Identity=32.7160493827161, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=31.5151515151515, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=31.3725490196078, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI145693134, Length=160, Percent_Identity=31.875, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788381, Length=203, Percent_Identity=30.0492610837438, Blast_Score=64, Evalue=3e-11,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=30.625, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI87082007, Length=133, Percent_Identity=36.8421052631579, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 62328; Mature: 62328

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFGELDVQNVPALRADGLCRDAIDFFVANPRLRLIAAVDATGRPAGALTRTKIISKAAS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
QFGRALYDARPLAEFMEPPRFVVGTDQQVADIANQLAATDLTNAPDGYILVDHLGRYAGI
HHHHHHHCCHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH
VDGLSVLRALLKLNMQLVDELNSEVAVRCEAEKEARRLADTDTLTGLNNRRLFIEEADRF
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCHHHCCCCCCEEEEECCCCC
VQLGTPAWLIYVDLDRFKYLNDKYGHAVGDDALKVIAGRIQDGWPGALVARLGGDEFGML
EEECCCEEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHH
IDAARLEGSLDEELIRLHASLCAPFPSKPGAVSVGASIGAAEFPGDAATRSEWLHAADKA
HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHH
MQRAKSDHGGVRLFDPTIDIAEAKQARLTESLQAAVSENQIRPVFQPFYSVANGQLAGYE
HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEE
VLARWNGPDIGFIPGPGEFIPLLERLGLIDEMFWGVAEQALLACRKMPSHLKIALNVSPI
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHH
QFANRLFPARLAALASRIGVQCNQLEIEITETAMFRDMTHTVSVLRDLSDMGMSIALDDF
HHHHHHHHHHHHHHHHHHCCEECEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
GTGYSSLTLVKELPLTKLKIDKSFIQSAQNSPSSDKIVSAAIGLSQALNILCCAEGVEDA
CCCHHHHHHHHHCCCHHEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
ATLERLRGMNCDLAQGFLLGRPAAVLGGGRSQALSAAG
HHHHHHCCCCCCHHCCHHHCCCHHHCCCCHHHHCCCCC
>Mature Secondary Structure
MQFGELDVQNVPALRADGLCRDAIDFFVANPRLRLIAAVDATGRPAGALTRTKIISKAAS
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
QFGRALYDARPLAEFMEPPRFVVGTDQQVADIANQLAATDLTNAPDGYILVDHLGRYAGI
HHHHHHHCCHHHHHHCCCCCEEECCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHH
VDGLSVLRALLKLNMQLVDELNSEVAVRCEAEKEARRLADTDTLTGLNNRRLFIEEADRF
HHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHCCHHHCCCCCCEEEEECCCCC
VQLGTPAWLIYVDLDRFKYLNDKYGHAVGDDALKVIAGRIQDGWPGALVARLGGDEFGML
EEECCCEEEEEEEHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCCHHHHH
IDAARLEGSLDEELIRLHASLCAPFPSKPGAVSVGASIGAAEFPGDAATRSEWLHAADKA
HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHH
MQRAKSDHGGVRLFDPTIDIAEAKQARLTESLQAAVSENQIRPVFQPFYSVANGQLAGYE
HHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCEE
VLARWNGPDIGFIPGPGEFIPLLERLGLIDEMFWGVAEQALLACRKMPSHLKIALNVSPI
EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHH
QFANRLFPARLAALASRIGVQCNQLEIEITETAMFRDMTHTVSVLRDLSDMGMSIALDDF
HHHHHHHHHHHHHHHHHHCCEECEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
GTGYSSLTLVKELPLTKLKIDKSFIQSAQNSPSSDKIVSAAIGLSQALNILCCAEGVEDA
CCCHHHHHHHHHCCCHHEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHH
ATLERLRGMNCDLAQGFLLGRPAAVLGGGRSQALSAAG
HHHHHHCCCCCCHHCCHHHCCCHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]