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The map label for this gene is cspC [C]

Identifier: 114797127

GI number: 114797127

Start: 98355

End: 98564

Strand: Direct

Name: cspC [C]

Synonym: HNE_0110

Alternate gene names: 114797127

Gene position: 98355-98564 (Clockwise)

Preceding gene: 114798099

Following gene: 114800120

Centisome position: 2.65

GC content: 52.38

Gene sequence:

>210_bases
ATGGCAACCGGCAAAGTTAAGTGGTTCAATGATCAGAAGGGCTTTGGTTTCATCAAGCCTGACGATGGCGGCGCAGACAT
TTTCGTCCACATTTCTGCTGTTGAGCGTTCGGGCCTCAAGACCCTCGCTGAGAACCAGTCTATCTCCTATGAGCTCTATA
AAGACGAGCGCCGCGGCAAGACCTCGGCTGTGGACCTCAAAGTCCTCTAA

Upstream 100 bases:

>100_bases
CAGACCGACGGCAATGACTTTCCCTCCTCCGAGTTTCGAACGGCACCGCACGGCGTAATTCCGCGTCTGCGCGGCCTACG
GAAGGCAAAGGAAAGCCATT

Downstream 100 bases:

>100_bases
GTCTGAAAGCTGGCTCCTTCGGGAACAGATCGCGGCGGCTTCCGGCAGGGGGCCGCCGATTTCGTTTCGGGGTGCTTTAA
AGCCTGACAGACACCCTCTC

Product: cold shock DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MATGKVKWFNDQKGFGFIKPDDGGADIFVHISAVERSGLKTLAENQSISYELYKDERRGKTSAVDLKVL

Sequences:

>Translated_69_residues
MATGKVKWFNDQKGFGFIKPDDGGADIFVHISAVERSGLKTLAENQSISYELYKDERRGKTSAVDLKVL
>Mature_68_residues
ATGKVKWFNDQKGFGFIKPDDGGADIFVHISAVERSGLKTLAENQSISYELYKDERRGKTSAVDLKVL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=66, Percent_Identity=50, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1786841, Length=49, Percent_Identity=59.1836734693878, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI2367114, Length=55, Percent_Identity=50.9090909090909, Blast_Score=70, Evalue=4e-14,
Organism=Escherichia coli, GI1787834, Length=48, Percent_Identity=58.3333333333333, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1789979, Length=50, Percent_Identity=58, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=42.1875, Blast_Score=66, Evalue=4e-13,
Organism=Escherichia coli, GI1787839, Length=50, Percent_Identity=52, Blast_Score=62, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24658520, Length=54, Percent_Identity=44.4444444444444, Blast_Score=65, Evalue=8e-12,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7678; Mature: 7547

Theoretical pI: Translated: 9.02; Mature: 9.02

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATGKVKWFNDQKGFGFIKPDDGGADIFVHISAVERSGLKTLAENQSISYELYKDERRGK
CCCCCEEEECCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCC
TSAVDLKVL
CCEEEEEEC
>Mature Secondary Structure 
ATGKVKWFNDQKGFGFIKPDDGGADIFVHISAVERSGLKTLAENQSISYELYKDERRGK
CCCCEEEECCCCCCEEECCCCCCCEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCC
TSAVDLKVL
CCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]