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The map label for this gene is rarA [H]

Identifier: 114332440

GI number: 114332440

Start: 2619610

End: 2620926

Strand: Direct

Name: rarA [H]

Synonym: Neut_2490

Alternate gene names: 114332440

Gene position: 2619610-2620926 (Clockwise)

Preceding gene: 114332439

Following gene: 114332444

Centisome position: 98.44

GC content: 50.19

Gene sequence:

>1317_bases
GTGACTGATTTTTGTTCTACGCATAATCCAGCAGCTCCGCTGGCAGAAAGGTTGCGCCCGCAGACCTTGGATAATGTTAT
CGGACAACCTCATCTGTTGGGTTCCGGCAAGCCTCTGCGACTTGCTTTTATATCTGGCAAACCACATTCCATGATTCTCT
GGGGGCCGCCTGGCAGTGGCAAAACTACGCTAGCGCGACTCATGGCACAGGCATTTGATACCGAGTTTATCGCTATTTCT
GCAGTATTGTCGGGTGTTAAGGATATTCGGGAAGCAATTGAGCGTGCTCGGTTTGCGCTGCAGCATACTGGCAGATCGAC
ATTGTTGTTTGTGGATGAAGTCCACCGATTCAACAAGGCTCAGCAGGATGCCTTTTTGCCCCATGTGGAACAGGGATTGA
TTACGTTCATCGGTGCAACCACCGAAAACCCTTCGTTTGAGGTCAACGGCGCGTTGTTGTCCCGTGCCCAGGTATACACA
CTGAATGCATTGACTGATCCGGAGTTGCATCAGCTGTTTGAACGAGCCTGCAAGATCGCGATCTCCAATTTACAGTTTGA
TCCAGACGCTGTTGAATTATTGGTTAAATTTGCAGATGGTGATGCGCGCCGCCTGCTGAACATGCTGGAGCAGGTAAAGC
ATGCCGCAGATACTGAAAAAACTGTAAAAATTGATATTGCTTATTTAAACAGAGTGCTGATGCGCAATGTACGCCAATTC
GATAAAGGAGGGGATGCGTTTTACGATCAGATTTCGGCGCTACATAAATCTATTCGCGGCTCTTCTCCCGATGCTGCACT
GTATTGGCTGTGCCGCATGCTCGATGGCGGTGCTGATCCACGCTATATTGGCAGAAGACTGGTTCGCACGGCTGCCGAAG
ATATCGGGCTGGCGGATCCGCGTGCATTAACGCTGGCACTGAATGCCTGTGAGGTATTTGAGCGGCTGGGCAGCCCCGAA
GGTGAATTGGCATTGGCCGAAGCTGCACTTTATCTGGCTTGTGCGCCGAAAAGCAATGCTGCCTACACTGCTTATAAGCA
GGCGCGGAGCTTCATAAAAGAGAATAGCTCTCATCCTGTTCCGGTCCACTTACGTAATGCGCCTGCCAAGTTAATGAAAG
AGCTGGGTTATGGGCGTGAGTACCGCTATGCCCATGATGAACCGGAATCTTATGCTGCCGGTGAAAACTATTTCCCCGAT
GATATGTCCGCCGTTCGGTTCTACCGGCCTACTGCTCATGGTCTGGAAATCAGAATAAGCGAGAAGCTCTCTTATTTACG
CTCACTCGACGAAAAAGCGAGGAAAACACAGGATTGA

Upstream 100 bases:

>100_bases
GATCAGGTGACATGGTTAATTTTTTCCGGGACAGAACAAAATCCAGTACTCACGCCTGATTTATTCCAGTTTACGCCGCC
TGAAGGGGTGGACGTGATCA

Downstream 100 bases:

>100_bases
CGTAAGAATTACCGCAGATTGATTCTATTATTGCAGCGTACCATCCATCAAATGTAATACTCGATCTGCCCGGCTAGCCA
GTTGGGTATCATGGGTGACG

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 437

Protein sequence:

>438_residues
MTDFCSTHNPAAPLAERLRPQTLDNVIGQPHLLGSGKPLRLAFISGKPHSMILWGPPGSGKTTLARLMAQAFDTEFIAIS
AVLSGVKDIREAIERARFALQHTGRSTLLFVDEVHRFNKAQQDAFLPHVEQGLITFIGATTENPSFEVNGALLSRAQVYT
LNALTDPELHQLFERACKIAISNLQFDPDAVELLVKFADGDARRLLNMLEQVKHAADTEKTVKIDIAYLNRVLMRNVRQF
DKGGDAFYDQISALHKSIRGSSPDAALYWLCRMLDGGADPRYIGRRLVRTAAEDIGLADPRALTLALNACEVFERLGSPE
GELALAEAALYLACAPKSNAAYTAYKQARSFIKENSSHPVPVHLRNAPAKLMKELGYGREYRYAHDEPESYAAGENYFPD
DMSAVRFYRPTAHGLEIRISEKLSYLRSLDEKARKTQD

Sequences:

>Translated_438_residues
MTDFCSTHNPAAPLAERLRPQTLDNVIGQPHLLGSGKPLRLAFISGKPHSMILWGPPGSGKTTLARLMAQAFDTEFIAIS
AVLSGVKDIREAIERARFALQHTGRSTLLFVDEVHRFNKAQQDAFLPHVEQGLITFIGATTENPSFEVNGALLSRAQVYT
LNALTDPELHQLFERACKIAISNLQFDPDAVELLVKFADGDARRLLNMLEQVKHAADTEKTVKIDIAYLNRVLMRNVRQF
DKGGDAFYDQISALHKSIRGSSPDAALYWLCRMLDGGADPRYIGRRLVRTAAEDIGLADPRALTLALNACEVFERLGSPE
GELALAEAALYLACAPKSNAAYTAYKQARSFIKENSSHPVPVHLRNAPAKLMKELGYGREYRYAHDEPESYAAGENYFPD
DMSAVRFYRPTAHGLEIRISEKLSYLRSLDEKARKTQD
>Mature_437_residues
TDFCSTHNPAAPLAERLRPQTLDNVIGQPHLLGSGKPLRLAFISGKPHSMILWGPPGSGKTTLARLMAQAFDTEFIAISA
VLSGVKDIREAIERARFALQHTGRSTLLFVDEVHRFNKAQQDAFLPHVEQGLITFIGATTENPSFEVNGALLSRAQVYTL
NALTDPELHQLFERACKIAISNLQFDPDAVELLVKFADGDARRLLNMLEQVKHAADTEKTVKIDIAYLNRVLMRNVRQFD
KGGDAFYDQISALHKSIRGSSPDAALYWLCRMLDGGADPRYIGRRLVRTAAEDIGLADPRALTLALNACEVFERLGSPEG
ELALAEAALYLACAPKSNAAYTAYKQARSFIKENSSHPVPVHLRNAPAKLMKELGYGREYRYAHDEPESYAAGENYFPDD
MSAVRFYRPTAHGLEIRISEKLSYLRSLDEKARKTQD

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=440, Percent_Identity=41.1363636363636, Blast_Score=311, Evalue=6e-85,
Organism=Homo sapiens, GI18426904, Length=440, Percent_Identity=36.5909090909091, Blast_Score=255, Evalue=7e-68,
Organism=Escherichia coli, GI1787119, Length=434, Percent_Identity=52.9953917050691, Blast_Score=454, Evalue=1e-129,
Organism=Escherichia coli, GI1786676, Length=244, Percent_Identity=27.8688524590164, Blast_Score=71, Evalue=1e-13,
Organism=Saccharomyces cerevisiae, GI6324111, Length=427, Percent_Identity=41.6861826697892, Blast_Score=314, Evalue=2e-86,
Organism=Saccharomyces cerevisiae, GI6324039, Length=226, Percent_Identity=25.6637168141593, Blast_Score=70, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48685; Mature: 48554

Theoretical pI: Translated: 7.40; Mature: 7.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDFCSTHNPAAPLAERLRPQTLDNVIGQPHLLGSGKPLRLAFISGKPHSMILWGPPGSG
CCCCCCCCCCHHHHHHHCCHHHHHHHCCCCCEECCCCCEEEEEECCCCCEEEEECCCCCC
KTTLARLMAQAFDTEFIAISAVLSGVKDIREAIERARFALQHTGRSTLLFVDEVHRFNKA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHH
QQDAFLPHVEQGLITFIGATTENPSFEVNGALLSRAQVYTLNALTDPELHQLFERACKIA
HHHHCCCHHHHCCEEEEECCCCCCCEEECHHHHCCEEEEEEECCCCHHHHHHHHHHHHHH
ISNLQFDPDAVELLVKFADGDARRLLNMLEQVKHAADTEKTVKIDIAYLNRVLMRNVRQF
HHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH
DKGGDAFYDQISALHKSIRGSSPDAALYWLCRMLDGGADPRYIGRRLVRTAAEDIGLADP
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
RALTLALNACEVFERLGSPEGELALAEAALYLACAPKSNAAYTAYKQARSFIKENSSHPV
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCC
PVHLRNAPAKLMKELGYGREYRYAHDEPESYAAGENYFPDDMSAVRFYRPTAHGLEIRIS
EEEECCCHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHEECCCCCCEEEEEH
EKLSYLRSLDEKARKTQD
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TDFCSTHNPAAPLAERLRPQTLDNVIGQPHLLGSGKPLRLAFISGKPHSMILWGPPGSG
CCCCCCCCCHHHHHHHCCHHHHHHHCCCCCEECCCCCEEEEEECCCCCEEEEECCCCCC
KTTLARLMAQAFDTEFIAISAVLSGVKDIREAIERARFALQHTGRSTLLFVDEVHRFNKA
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHH
QQDAFLPHVEQGLITFIGATTENPSFEVNGALLSRAQVYTLNALTDPELHQLFERACKIA
HHHHCCCHHHHCCEEEEECCCCCCCEEECHHHHCCEEEEEEECCCCHHHHHHHHHHHHHH
ISNLQFDPDAVELLVKFADGDARRLLNMLEQVKHAADTEKTVKIDIAYLNRVLMRNVRQF
HHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH
DKGGDAFYDQISALHKSIRGSSPDAALYWLCRMLDGGADPRYIGRRLVRTAAEDIGLADP
CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCC
RALTLALNACEVFERLGSPEGELALAEAALYLACAPKSNAAYTAYKQARSFIKENSSHPV
CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHCCCCCCC
PVHLRNAPAKLMKELGYGREYRYAHDEPESYAAGENYFPDDMSAVRFYRPTAHGLEIRIS
EEEECCCHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHEECCCCCCEEEEEH
EKLSYLRSLDEKARKTQD
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]