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The map label for this gene is sdhD [H]

Identifier: 114332435

GI number: 114332435

Start: 2613244

End: 2613597

Strand: Direct

Name: sdhD [H]

Synonym: Neut_2485

Alternate gene names: 114332435

Gene position: 2613244-2613597 (Clockwise)

Preceding gene: 114332434

Following gene: 114332436

Centisome position: 98.2

GC content: 43.79

Gene sequence:

>354_bases
ATGGTAAAACCTGTAAACCGTATTATAACCGGGGCACATTATGGTTTAAGGGACTGGCTTGTGCAGCGAGTGACCGCTGT
AATAATGGCGGTCTATACCGGATTACTGATTGTACTTGTGGTTGTTTACCAACCTGAAGGTTACGAAGAATTTAAATCGC
TATTTTCCATTCAGTGGGTAAAAATTGCTTCATTGCTTTGTTTTGCCGGTCTATGCTGGCATGCTTGGGTGGGCGTGCGC
AATGTCCTGATGGATTATGTTCACCCGATGTTTATTCGTCTGACACTGCAAGTCATGTGTATCGTGGCATTATTGGGCTA
TCTGATATGGTTCTTGGATATTTTGTGGGGCTGA

Upstream 100 bases:

>100_bases
TTGATATGCATTACGGCTTGCAATTACAGCACGCTCGCCTGAGTAGCAAACTGGTGCTGATTTTCGGGGCGATTTTAACA
GTATTGGCGGGAATATGGTT

Downstream 100 bases:

>100_bases
CGTGAAAGTTAAACAAAGGAAATTTGATGTGGTCATTGTCGGCGCGGGCGGAGCAGGTATGCGTGCCGCATTGCAGTTGT
CCGAGGCTGGATTCAAGGTT

Product: succinate dehydrogenase, cytochrome b subunit

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MVKPVNRIITGAHYGLRDWLVQRVTAVIMAVYTGLLIVLVVVYQPEGYEEFKSLFSIQWVKIASLLCFAGLCWHAWVGVR
NVLMDYVHPMFIRLTLQVMCIVALLGYLIWFLDILWG

Sequences:

>Translated_117_residues
MVKPVNRIITGAHYGLRDWLVQRVTAVIMAVYTGLLIVLVVVYQPEGYEEFKSLFSIQWVKIASLLCFAGLCWHAWVGVR
NVLMDYVHPMFIRLTLQVMCIVALLGYLIWFLDILWG
>Mature_117_residues
MVKPVNRIITGAHYGLRDWLVQRVTAVIMAVYTGLLIVLVVVYQPEGYEEFKSLFSIQWVKIASLLCFAGLCWHAWVGVR
NVLMDYVHPMFIRLTLQVMCIVALLGYLIWFLDILWG

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13518; Mature: 13518

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVKPVNRIITGAHYGLRDWLVQRVTAVIMAVYTGLLIVLVVVYQPEGYEEFKSLFSIQWV
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KIASLLCFAGLCWHAWVGVRNVLMDYVHPMFIRLTLQVMCIVALLGYLIWFLDILWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MVKPVNRIITGAHYGLRDWLVQRVTAVIMAVYTGLLIVLVVVYQPEGYEEFKSLFSIQWV
CCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KIASLLCFAGLCWHAWVGVRNVLMDYVHPMFIRLTLQVMCIVALLGYLIWFLDILWG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]