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The map label for this gene is sdhC [H]

Identifier: 114332434

GI number: 114332434

Start: 2612858

End: 2613250

Strand: Direct

Name: sdhC [H]

Synonym: Neut_2484

Alternate gene names: 114332434

Gene position: 2612858-2613250 (Clockwise)

Preceding gene: 114332430

Following gene: 114332435

Centisome position: 98.19

GC content: 47.07

Gene sequence:

>393_bases
ATGGAAACTCAATATCCGGGGAGACGACGCCCCAAGTATCTGAATCTGTTTAAAATCAGAGAACCTCTTCCCGCCATCGT
TTCCATTCTGCATCGCATTAGCGGCGTATTGCTTTTTTTTCCGGGAATCCCGTTATTTCTCTGCGGGCTGCAAATGATGT
TGGAATCACCGGAGAGTTTTGCCCGCTTGCAATCAATTCTAATTCATCCGCTGAGCAGGCTGTTTCTGCTGTTCGCAACC
TGGTTTTTCCTACATCATCTGTTTGCCGGTATTCGTCATCTGGGGCTTGATATGCATTACGGCTTGCAATTACAGCACGC
TCGCCTGAGTAGCAAACTGGTGCTGATTTTCGGGGCGATTTTAACAGTATTGGCGGGAATATGGTTATGGTAA

Upstream 100 bases:

>100_bases
TAAGTTGTCTGCTGGCATGGAACGGATTAAACTAGAAAACTTGAGTAGCTGCTGGGGTTATCCACCCACCGATAAATTTA
TCTGGTCTGATTGATTATTT

Downstream 100 bases:

>100_bases
AACCTGTAAACCGTATTATAACCGGGGCACATTATGGTTTAAGGGACTGGCTTGTGCAGCGAGTGACCGCTGTAATAATG
GCGGTCTATACCGGATTACT

Product: succinate dehydrogenase, cytochrome b subunit

Products: fumarate; reduced acceptor

Alternate protein names: Cytochrome b-556 [H]

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
METQYPGRRRPKYLNLFKIREPLPAIVSILHRISGVLLFFPGIPLFLCGLQMMLESPESFARLQSILIHPLSRLFLLFAT
WFFLHHLFAGIRHLGLDMHYGLQLQHARLSSKLVLIFGAILTVLAGIWLW

Sequences:

>Translated_130_residues
METQYPGRRRPKYLNLFKIREPLPAIVSILHRISGVLLFFPGIPLFLCGLQMMLESPESFARLQSILIHPLSRLFLLFAT
WFFLHHLFAGIRHLGLDMHYGLQLQHARLSSKLVLIFGAILTVLAGIWLW
>Mature_130_residues
METQYPGRRRPKYLNLFKIREPLPAIVSILHRISGVLLFFPGIPLFLCGLQMMLESPESFARLQSILIHPLSRLFLLFAT
WFFLHHLFAGIRHLGLDMHYGLQLQHARLSSKLVLIFGAILTVLAGIWLW

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2009

COG function: function code C; Succinate dehydrogenase/fumarate reductase, cytochrome b subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b560 family [H]

Homologues:

Organism=Escherichia coli, GI1786940, Length=129, Percent_Identity=36.4341085271318, Blast_Score=72, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018495
- InterPro:   IPR014314
- InterPro:   IPR014361
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 15047; Mature: 15047

Theoretical pI: Translated: 11.08; Mature: 11.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METQYPGRRRPKYLNLFKIREPLPAIVSILHRISGVLLFFPGIPLFLCGLQMMLESPESF
CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHH
ARLQSILIHPLSRLFLLFATWFFLHHLFAGIRHLGLDMHYGLQLQHARLSSKLVLIFGAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHH
LTVLAGIWLW
HHHHHHHHCC
>Mature Secondary Structure
METQYPGRRRPKYLNLFKIREPLPAIVSILHRISGVLLFFPGIPLFLCGLQMMLESPESF
CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHH
ARLQSILIHPLSRLFLLFATWFFLHHLFAGIRHLGLDMHYGLQLQHARLSSKLVLIFGAI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHH
LTVLAGIWLW
HHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]