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The map label for this gene is yohD [H]

Identifier: 114332381

GI number: 114332381

Start: 2541613

End: 2542182

Strand: Reverse

Name: yohD [H]

Synonym: Neut_2429

Alternate gene names: 114332381

Gene position: 2542182-2541613 (Counterclockwise)

Preceding gene: 114332383

Following gene: 114332380

Centisome position: 95.53

GC content: 49.3

Gene sequence:

>570_bases
ATGGATGTTCCTGGCTTGATTCAATCGTATGGTTACCTGGCTGTTGCCGTGGGAACTTTTCTTGAAGGTGAAAGTGTGTT
GTTAACCGCCGGTGCGGCAGCCTTTCATGGCTATCTCTGGATGCCTGCAGTCATTTTGATAGCAGCCGTATCGGGTTTTC
TGGGTGATCAAATCTCTTTTTGTGTAGGACGCAGATACGGCAACAGATTACTGGCAAAATTCCCTTCCTTGCGGCGACGA
GCTGCACGTGTAAGCGCACTACTGGAGCGTCATAACGTGTTGTTTATCCTCGCTGTTCGTTTTATGTACGGGCTGCGTGT
TGCCGGGCCTATGGCGATGGGTATGAGTGGTATTTACTGGTCTCGGTTTCTGGTTCTGAACCTGGCGGGAGCAATTATCT
GGGCGATTACGATTGCCAGTATTGGCTATGGACTCGGCCAAGGTTTTGTCTATCTGCTCGCTCATTTTGATGCTGAAGAA
ATCTGGTTACTGGTCGCTCTCCTGCTTCCAGCGACCATCTGGAGATTGATTGTGCGCAGGAAACACTCGGTACGTTCAAA
ACATTCTTAA

Upstream 100 bases:

>100_bases
AACCTGCCCGTTACAACCTTGTACATTAACCACTTTGATACAGAGTCTATTCAAATAATTCAGAAAATAGATTATTCCCT
GCATAAGGAAACGTTTGAGC

Downstream 100 bases:

>100_bases
ATTTGAGCGATATCCAGTTGTCGTATCTGGATAAACATTTGTTATAAAGAGGTACGAAAATTCGAGGTATAAGACCCTTA
GCGCATATGTTCTGATAGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MDVPGLIQSYGYLAVAVGTFLEGESVLLTAGAAAFHGYLWMPAVILIAAVSGFLGDQISFCVGRRYGNRLLAKFPSLRRR
AARVSALLERHNVLFILAVRFMYGLRVAGPMAMGMSGIYWSRFLVLNLAGAIIWAITIASIGYGLGQGFVYLLAHFDAEE
IWLLVALLLPATIWRLIVRRKHSVRSKHS

Sequences:

>Translated_189_residues
MDVPGLIQSYGYLAVAVGTFLEGESVLLTAGAAAFHGYLWMPAVILIAAVSGFLGDQISFCVGRRYGNRLLAKFPSLRRR
AARVSALLERHNVLFILAVRFMYGLRVAGPMAMGMSGIYWSRFLVLNLAGAIIWAITIASIGYGLGQGFVYLLAHFDAEE
IWLLVALLLPATIWRLIVRRKHSVRSKHS
>Mature_189_residues
MDVPGLIQSYGYLAVAVGTFLEGESVLLTAGAAAFHGYLWMPAVILIAAVSGFLGDQISFCVGRRYGNRLLAKFPSLRRR
AARVSALLERHNVLFILAVRFMYGLRVAGPMAMGMSGIYWSRFLVLNLAGAIIWAITIASIGYGLGQGFVYLLAHFDAEE
IWLLVALLLPATIWRLIVRRKHSVRSKHS

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=159, Percent_Identity=41.5094339622642, Blast_Score=129, Evalue=2e-31,
Organism=Escherichia coli, GI1789384, Length=136, Percent_Identity=33.8235294117647, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 20811; Mature: 20811

Theoretical pI: Translated: 10.71; Mature: 10.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVPGLIQSYGYLAVAVGTFLEGESVLLTAGAAAFHGYLWMPAVILIAAVSGFLGDQISF
CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CVGRRYGNRLLAKFPSLRRRAARVSALLERHNVLFILAVRFMYGLRVAGPMAMGMSGIYW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHCCCHHHH
SRFLVLNLAGAIIWAITIASIGYGLGQGFVYLLAHFDAEEIWLLVALLLPATIWRLIVRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
KHSVRSKHS
HHHHHCCCC
>Mature Secondary Structure
MDVPGLIQSYGYLAVAVGTFLEGESVLLTAGAAAFHGYLWMPAVILIAAVSGFLGDQISF
CCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CVGRRYGNRLLAKFPSLRRRAARVSALLERHNVLFILAVRFMYGLRVAGPMAMGMSGIYW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHCCCHHHH
SRFLVLNLAGAIIWAITIASIGYGLGQGFVYLLAHFDAEEIWLLVALLLPATIWRLIVRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
KHSVRSKHS
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]