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The map label for this gene is yddU [C]

Identifier: 114332245

GI number: 114332245

Start: 2410030

End: 2411754

Strand: Direct

Name: yddU [C]

Synonym: Neut_2285

Alternate gene names: 114332245

Gene position: 2410030-2411754 (Clockwise)

Preceding gene: 114332244

Following gene: 114332246

Centisome position: 90.57

GC content: 44.23

Gene sequence:

>1725_bases
ATGTCATATGGAAAATTAAAACTTTTAATCATCGGCCATTCCAAAGCTGATGTAAATCAGCTAAGTACCGATTTTAGTCG
TAACGGAAAACAGCTGATTTACCAACATGCAAACAGTTTACCCGACGTCCGGGCGGCATTGGATACATCAAGCTGGGATG
CAGTCATTGCAGAATATTCAATGGCTGGATTTGATGCCTTGCAAGTGCTGGATCTGCTTAAAACCCGCCACCAAACGACA
CCCTTTATTCTGTACACCTCGATAACAGATGAGCAAGTAATACTCTCGGCATTACGCAACGGGGCAAGTGACTGTGTACC
AAAAGGACATTCGACGCGGCTGATACTGGCTATCAATCGAGGTTTTGAGCTCATGGATCTGAAACGCAGGAAACGTCAGG
CCGATAGCCATATTTACCGTATGACCTATTATGATGAACTGACCGGCCTGCCCAAACACAATCTGTTTTGTGAAAAAGCA
GCTGCACTGCTGTCAAACAACGCTGTGATTGATGGCATGATCGCTGCTATTTATTTCATCGATATCAACCGTTTGTCACG
CATCAATAGTAAATATGGCTACAGCATCAATGATCAGCTAATACAACAATTCGCCAGCCGTTTATCCATCTACTCCGACA
ACAGCTGTATTCTGGCACGCACCGAAGGAGGTAATTTTGTTTTTCTCAAAACCAGCCTGGCCAACACCAGCCAAGCACAG
ATATTCGCAAACCAGTTGCTAAAGCTCGCCACCACACCTTTTATCATTAATGATCTTGAATTTTATATCACCCTGACGAT
AGGAATCTGCCTCTATCCTCGCGATGGCAGGGAAATTGAGGTGCTGCTGGCCAATGCCGAAAATGCATCATCTTTTACCC
GAAAAATCTGGCCTAATACCTATAGATTCTATGCCCGGGAAATTGGTGAAGCTTCGTTACAAAAGGTCAAGATTGAGCAA
TCATTGCAGAAAATCATTAATGACAAAGAACTCGTTCTACATTATCAACCGGTGATTGATCTCATGACCGGAAAAATTAT
CGGAGTCGAAGCACTGGTCCGCTGGCGTCATCCGGAACTCGGACTCATTCCTCCAGATAAATTTGTTCCTCTGGCTATTG
AATCCGGCTCCATTGTCAAAATAGGCAAATGGGTATTACATGAAGCTTGCAGACAAGCCAAATCTTGGCAAGATGCCGGC
CTTGAACCCGCTTTCATTGCAGTCAACCTTTCTGCCATAGAACTGGATCAGCTCCAGTTAATTAATCACGTTGCTGAAGC
ATTACATGCGACGGGGCTTGACCCTTCAAAACTGGAGCTAGAAATTAATGAATCTGTATTAATGCAGGATATAGATGGAA
GCACCAGAATCTTGAACGAACTAAAGAAAATGGGTGTAAAAATCGTGATGGATAATTTTGGCACCGGCTACTCATCTCTC
AACCATCTGCGGCGCCTGCCCATCGATACCATCAAGATCGGTCAACCACTCGTTCAGGATATCGCCAGCAAATCTGACAG
CTCCGTAATCATTACAGCCATTATTGCGCTTGCCCGGAATCTCGGCATGCAAATACGAGCAGAAGGTGTTCAATCACAAA
CACAACTCGATTTTCTGAAACAAGCCAACTGTCATCACGTTCAGGGATTCTTATTCACTCCCCCACTTTCAGCAGAGCAT
TTTTTACCACTTATCGAGCAACGCAAAACTGGTACTTTTTCATAA

Upstream 100 bases:

>100_bases
ATTGATTACCACATAAACCAGGTTTTTCACCCTTTCCACAGAATCAAGTTTTTCCTGTCCGGGTCGATACCGGAAGATAT
CACACCAGGAAGAATCTGAA

Downstream 100 bases:

>100_bases
CTTTGCACAGTATGGCGGTCACCGCCACATGCATGAAGATGATACGAACCACCTCTGCTTTACCTGTCCCGTTTTCAGAA
TAAACCTGACAAGTGGAAAT

Product: response regulator receiver modulated diguanylate cyclase/phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 574; Mature: 573

Protein sequence:

>574_residues
MSYGKLKLLIIGHSKADVNQLSTDFSRNGKQLIYQHANSLPDVRAALDTSSWDAVIAEYSMAGFDALQVLDLLKTRHQTT
PFILYTSITDEQVILSALRNGASDCVPKGHSTRLILAINRGFELMDLKRRKRQADSHIYRMTYYDELTGLPKHNLFCEKA
AALLSNNAVIDGMIAAIYFIDINRLSRINSKYGYSINDQLIQQFASRLSIYSDNSCILARTEGGNFVFLKTSLANTSQAQ
IFANQLLKLATTPFIINDLEFYITLTIGICLYPRDGREIEVLLANAENASSFTRKIWPNTYRFYAREIGEASLQKVKIEQ
SLQKIINDKELVLHYQPVIDLMTGKIIGVEALVRWRHPELGLIPPDKFVPLAIESGSIVKIGKWVLHEACRQAKSWQDAG
LEPAFIAVNLSAIELDQLQLINHVAEALHATGLDPSKLELEINESVLMQDIDGSTRILNELKKMGVKIVMDNFGTGYSSL
NHLRRLPIDTIKIGQPLVQDIASKSDSSVIITAIIALARNLGMQIRAEGVQSQTQLDFLKQANCHHVQGFLFTPPLSAEH
FLPLIEQRKTGTFS

Sequences:

>Translated_574_residues
MSYGKLKLLIIGHSKADVNQLSTDFSRNGKQLIYQHANSLPDVRAALDTSSWDAVIAEYSMAGFDALQVLDLLKTRHQTT
PFILYTSITDEQVILSALRNGASDCVPKGHSTRLILAINRGFELMDLKRRKRQADSHIYRMTYYDELTGLPKHNLFCEKA
AALLSNNAVIDGMIAAIYFIDINRLSRINSKYGYSINDQLIQQFASRLSIYSDNSCILARTEGGNFVFLKTSLANTSQAQ
IFANQLLKLATTPFIINDLEFYITLTIGICLYPRDGREIEVLLANAENASSFTRKIWPNTYRFYAREIGEASLQKVKIEQ
SLQKIINDKELVLHYQPVIDLMTGKIIGVEALVRWRHPELGLIPPDKFVPLAIESGSIVKIGKWVLHEACRQAKSWQDAG
LEPAFIAVNLSAIELDQLQLINHVAEALHATGLDPSKLELEINESVLMQDIDGSTRILNELKKMGVKIVMDNFGTGYSSL
NHLRRLPIDTIKIGQPLVQDIASKSDSSVIITAIIALARNLGMQIRAEGVQSQTQLDFLKQANCHHVQGFLFTPPLSAEH
FLPLIEQRKTGTFS
>Mature_573_residues
SYGKLKLLIIGHSKADVNQLSTDFSRNGKQLIYQHANSLPDVRAALDTSSWDAVIAEYSMAGFDALQVLDLLKTRHQTTP
FILYTSITDEQVILSALRNGASDCVPKGHSTRLILAINRGFELMDLKRRKRQADSHIYRMTYYDELTGLPKHNLFCEKAA
ALLSNNAVIDGMIAAIYFIDINRLSRINSKYGYSINDQLIQQFASRLSIYSDNSCILARTEGGNFVFLKTSLANTSQAQI
FANQLLKLATTPFIINDLEFYITLTIGICLYPRDGREIEVLLANAENASSFTRKIWPNTYRFYAREIGEASLQKVKIEQS
LQKIINDKELVLHYQPVIDLMTGKIIGVEALVRWRHPELGLIPPDKFVPLAIESGSIVKIGKWVLHEACRQAKSWQDAGL
EPAFIAVNLSAIELDQLQLINHVAEALHATGLDPSKLELEINESVLMQDIDGSTRILNELKKMGVKIVMDNFGTGYSSLN
HLRRLPIDTIKIGQPLVQDIASKSDSSVIITAIIALARNLGMQIRAEGVQSQTQLDFLKQANCHHVQGFLFTPPLSAEHF
LPLIEQRKTGTFS

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=435, Percent_Identity=32.183908045977, Blast_Score=249, Evalue=2e-67,
Organism=Escherichia coli, GI1787541, Length=438, Percent_Identity=31.7351598173516, Blast_Score=238, Evalue=7e-64,
Organism=Escherichia coli, GI226510982, Length=365, Percent_Identity=30.1369863013699, Blast_Score=166, Evalue=4e-42,
Organism=Escherichia coli, GI1790496, Length=249, Percent_Identity=30.5220883534137, Blast_Score=149, Evalue=4e-37,
Organism=Escherichia coli, GI87081845, Length=239, Percent_Identity=33.8912133891213, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1786507, Length=264, Percent_Identity=31.0606060606061, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI87081743, Length=246, Percent_Identity=30.0813008130081, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI1788502, Length=256, Percent_Identity=26.5625, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87081980, Length=234, Percent_Identity=32.9059829059829, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1787055, Length=245, Percent_Identity=30.2040816326531, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1788849, Length=431, Percent_Identity=23.6658932714617, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI87082096, Length=242, Percent_Identity=26.8595041322314, Blast_Score=91, Evalue=3e-19,
Organism=Escherichia coli, GI1787410, Length=237, Percent_Identity=26.5822784810127, Blast_Score=75, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 64226; Mature: 64095

Theoretical pI: Translated: 7.67; Mature: 7.67

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYGKLKLLIIGHSKADVNQLSTDFSRNGKQLIYQHANSLPDVRAALDTSSWDAVIAEYS
CCCCEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHH
MAGFDALQVLDLLKTRHQTTPFILYTSITDEQVILSALRNGASDCVPKGHSTRLILAINR
HCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCHHCCCCCCCCEEEEEECC
GFELMDLKRRKRQADSHIYRMTYYDELTGLPKHNLFCEKAAALLSNNAVIDGMIAAIYFI
CCHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHEE
DINRLSRINSKYGYSINDQLIQQFASRLSIYSDNSCILARTEGGNFVFLKTSLANTSQAQ
EHHHHHHHCCCCCCCCCHHHHHHHHHHHCEECCCCEEEEEECCCCEEEEEECCCCCHHHH
IFANQLLKLATTPFIINDLEFYITLTIGICLYPRDGREIEVLLANAENASSFTRKIWPNT
HHHHHHHHHHCCCEEEECCEEEEEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHCCCH
YRFYAREIGEASLQKVKIEQSLQKIINDKELVLHYQPVIDLMTGKIIGVEALVRWRHPEL
HHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCEEEHHHHHHCCCCCC
GLIPPDKFVPLAIESGSIVKIGKWVLHEACRQAKSWQDAGLEPAFIAVNLSAIELDQLQL
CCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEHEEHHHHHH
INHVAEALHATGLDPSKLELEINESVLMQDIDGSTRILNELKKMGVKIVMDNFGTGYSSL
HHHHHHHHHHCCCCCCEEEEEECCHHHEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHH
NHLRRLPIDTIKIGQPLVQDIASKSDSSVIITAIIALARNLGMQIRAEGVQSQTQLDFLK
HHHHHCCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
QANCHHVQGFLFTPPLSAEHFLPLIEQRKTGTFS
CCCCCEECCEEECCCCCHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SYGKLKLLIIGHSKADVNQLSTDFSRNGKQLIYQHANSLPDVRAALDTSSWDAVIAEYS
CCCEEEEEEEECCCCCHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHCCCCCHHHHHHHH
MAGFDALQVLDLLKTRHQTTPFILYTSITDEQVILSALRNGASDCVPKGHSTRLILAINR
HCCHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCHHCCCCCCCCEEEEEECC
GFELMDLKRRKRQADSHIYRMTYYDELTGLPKHNLFCEKAAALLSNNAVIDGMIAAIYFI
CCHHHHHHHHHHHHCCCEEEEEEHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHEE
DINRLSRINSKYGYSINDQLIQQFASRLSIYSDNSCILARTEGGNFVFLKTSLANTSQAQ
EHHHHHHHCCCCCCCCCHHHHHHHHHHHCEECCCCEEEEEECCCCEEEEEECCCCCHHHH
IFANQLLKLATTPFIINDLEFYITLTIGICLYPRDGREIEVLLANAENASSFTRKIWPNT
HHHHHHHHHHCCCEEEECCEEEEEEEEEEEEECCCCCEEEEEEECCCCHHHHHHHHCCCH
YRFYAREIGEASLQKVKIEQSLQKIINDKELVLHYQPVIDLMTGKIIGVEALVRWRHPEL
HHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCEEEHHHHHHCCCCCC
GLIPPDKFVPLAIESGSIVKIGKWVLHEACRQAKSWQDAGLEPAFIAVNLSAIELDQLQL
CCCCCCCCEEEEECCCCEEEHHHHHHHHHHHHHCCHHHCCCCCEEEEEEEEHEEHHHHHH
INHVAEALHATGLDPSKLELEINESVLMQDIDGSTRILNELKKMGVKIVMDNFGTGYSSL
HHHHHHHHHHCCCCCCEEEEEECCHHHEECCCCHHHHHHHHHHCCEEEEEECCCCCHHHH
NHLRRLPIDTIKIGQPLVQDIASKSDSSVIITAIIALARNLGMQIRAEGVQSQTQLDFLK
HHHHHCCCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHH
QANCHHVQGFLFTPPLSAEHFLPLIEQRKTGTFS
CCCCCEECCEEECCCCCHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]