| Definition | Nitrosomonas eutropha C91, complete genome. |
|---|---|
| Accession | NC_008344 |
| Length | 2,661,057 |
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The map label for this gene is yncD [H]
Identifier: 114332057
GI number: 114332057
Start: 2215450
End: 2217747
Strand: Direct
Name: yncD [H]
Synonym: Neut_2092
Alternate gene names: 114332057
Gene position: 2215450-2217747 (Clockwise)
Preceding gene: 114332056
Following gene: 114332061
Centisome position: 83.25
GC content: 52.44
Gene sequence:
>2298_bases ATGAAATCTATTGCCGGATTATTTTCGTTACTGCTTCTGCTATGGGCGAATACGGCCAATGCGCAAAATGACATCCCCTA TTCCTTCAATCTTCCTGCACAGCCTCTTTCTTCCACACTGAATCACCTGGCCAATATCACTGGCATCAAGCTGATTTATG CGGATGAAATCACCCGAAATCATCTTTCTCCACCTCTACACGGCAACTTCACACTGGCAGAAGCATTGAACCAGGTACTG AATAAAAACCGGTTGAAGTACGAGATGGTCGATAACAGCATGGTCGTCATCAGCCAGGCTGCTGCCAATACGGTTTTACC TGAAATCACCATCACCACTGATTCATCCGCGGCCGGTAACGAAGCCTCACTAACCGTTCCGAATACCGCACAGGCAACGG CCAATATCCAGTACACACCCGGTGCCGTCGAAGTCATATCCGATGCCCGATTCAAAAGTACACCGGCACAAACCATCAAG GACATCGTCGGCTGGATACCCGGTGTCATCGCCCAACCCAAATCGAATATCGATAACCGGATATCGATCCGCGGCTCCGG ATTAACGCGCAACTATGGCAACCGTGGCATCAATATGTATATGGACGGCATCCCGATCAACACTGCTGACGGCCTGTTCG ATGTCTTCGAAATCGATCCAGGTGCTTACCGCTACGTCGAAGTGTTCAAGGGTGCCAATGCACTGCGTTACGGAGCCAAC TCTCTCGGTGGCGCAATCAACCTCGTCACACCGACAGGGTATGATGCTTCCCGGTTCAGCGGGCGAGTGGATACAGGCAG TTTCGGCTATATGAAAGGACAGGTGAGCACGAGCGGAATCCACGGCCCGCATGATTATTTCATCACTGCATCGGCACAGC GCGAGGATGGCTATCGTGATCACAGCAATGGCCATATGGTACTCGGTAGTGCCAACTTCGGTTATCGATTCTTACCGGAT GCCGAGACACGCTTTTACCTGAACGCAAATACATGGCGCCAGCGTTTACCAGGCGAGCTGACCAAGCGCATGGTGCTGGA TTCACCACGCAGCGCCGATCCCGAGTTCGTACGGCAGGATCAGCAACGCAACATCGACTCAGTGCGGCTCGCCAACAAGA CTACGCTACGCTTCGGCCCCACCACGGTCGACTTTGGTCTCTTTGGCCACCATCGCCATGTGGATCATCCTATCTACCGG TACCTGGACTACTATGTCCATGACTACGGCGGCTTCGCGCGTGCAACCGATGACCGTCTGATCGCCGGCTTCCGCAACCG CTTCGTCGCGGGTGCAAACGTTCATAACGGCAAAATCAACTACAAAGAATATATCAACCCGGGAGATGCGGTGAAAAGTG CACTCGCCATGTCCACGGTAGATAAATCACAGAACTATTCAATCTATGTGGAAAACAGTTTCTACTTCCTGCAGAATGTC GCGCTGGTTGCTGGCGGGCAGTTCCTGCATGCGATTCGCGACCGGAATGACCGTTTCCTGGCGGATGGCGATCAGTCGGG CCGCCGTGCTTACAGCATCTTCAGCCCCAGAGGAGGATTGTTGTGGGACATTGCTCCCGATGTACAGATCTTTGCCAATA TCTCACGCAGTGCCGAAGTACCGACTTTCGACACGAACACCTTTATGACACCCGCTAGTTCGGAACTCGATGCCCAGACT GCTACCACCTATGAAATCGGAACACGCGGGCACAGAGCCGATTTCAAATGGGATATCGCCTTCTATCGCGCCCATATCAG AAATGAGCTGCAATGCCTGAGAACGTCGCCGTTCAGCCCATGTACGGTAGTCAATGCAGATCGTACCGTACATCAGGGGA TCGAACTGGGATTCGGTGCCGCATTTCTCAAAGGAATCGCCGCCCGGAAAGATCTTCTCTGGCTCGACATAGCCTACACC TACAACGATTTCTTTTTTGACAATGACACCCTTTATGGAAACAACAAGCTGCCCGGCGTACCACCCCACTACCTGCGCGC AGAAGTGCTCTACAAATATCCGAATGGATTCCACGCCGGTCCAAATGTGGAATGGATGCCACGAGCCTACTACGCTGATA ATGCTAATAATCTCTCCATTGGCTCATACGCGCTCCTAAACTTCAGAATCAGCTATGACCCAGGTAAAAAATGGTCCGGT TACCTCGAAGGACGTAATCTACTTGATACCCGCTACATCTCAACCACGATCACCTCCGGCACGGCTGATGCCACCTCCGC ACTCTTCAATTCCGGCTATGGTCGGGCAATTTACGGTGGCATACGGTTCAACTGGTGA
Upstream 100 bases:
>100_bases CCGGATAAATAAAAAAATGTGACCAGTTCATCGTGTTTTTCACGTCTTACCAGACAGGACATCAGAAACCTTTATACCTT CCTGACTGGAGAAAAACACC
Downstream 100 bases:
>100_bases AAACAAAAATTTCAAATCTATCGTACAGGTTGTACAGCTTCACACTGCTCACCAATCCAGCGACCGGTTGTGTCAGCAGA TACATAAACCGGCATGTCCT
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 765; Mature: 765
Protein sequence:
>765_residues MKSIAGLFSLLLLLWANTANAQNDIPYSFNLPAQPLSSTLNHLANITGIKLIYADEITRNHLSPPLHGNFTLAEALNQVL NKNRLKYEMVDNSMVVISQAAANTVLPEITITTDSSAAGNEASLTVPNTAQATANIQYTPGAVEVISDARFKSTPAQTIK DIVGWIPGVIAQPKSNIDNRISIRGSGLTRNYGNRGINMYMDGIPINTADGLFDVFEIDPGAYRYVEVFKGANALRYGAN SLGGAINLVTPTGYDASRFSGRVDTGSFGYMKGQVSTSGIHGPHDYFITASAQREDGYRDHSNGHMVLGSANFGYRFLPD AETRFYLNANTWRQRLPGELTKRMVLDSPRSADPEFVRQDQQRNIDSVRLANKTTLRFGPTTVDFGLFGHHRHVDHPIYR YLDYYVHDYGGFARATDDRLIAGFRNRFVAGANVHNGKINYKEYINPGDAVKSALAMSTVDKSQNYSIYVENSFYFLQNV ALVAGGQFLHAIRDRNDRFLADGDQSGRRAYSIFSPRGGLLWDIAPDVQIFANISRSAEVPTFDTNTFMTPASSELDAQT ATTYEIGTRGHRADFKWDIAFYRAHIRNELQCLRTSPFSPCTVVNADRTVHQGIELGFGAAFLKGIAARKDLLWLDIAYT YNDFFFDNDTLYGNNKLPGVPPHYLRAEVLYKYPNGFHAGPNVEWMPRAYYADNANNLSIGSYALLNFRISYDPGKKWSG YLEGRNLLDTRYISTTITSGTADATSALFNSGYGRAIYGGIRFNW
Sequences:
>Translated_765_residues MKSIAGLFSLLLLLWANTANAQNDIPYSFNLPAQPLSSTLNHLANITGIKLIYADEITRNHLSPPLHGNFTLAEALNQVL NKNRLKYEMVDNSMVVISQAAANTVLPEITITTDSSAAGNEASLTVPNTAQATANIQYTPGAVEVISDARFKSTPAQTIK DIVGWIPGVIAQPKSNIDNRISIRGSGLTRNYGNRGINMYMDGIPINTADGLFDVFEIDPGAYRYVEVFKGANALRYGAN SLGGAINLVTPTGYDASRFSGRVDTGSFGYMKGQVSTSGIHGPHDYFITASAQREDGYRDHSNGHMVLGSANFGYRFLPD AETRFYLNANTWRQRLPGELTKRMVLDSPRSADPEFVRQDQQRNIDSVRLANKTTLRFGPTTVDFGLFGHHRHVDHPIYR YLDYYVHDYGGFARATDDRLIAGFRNRFVAGANVHNGKINYKEYINPGDAVKSALAMSTVDKSQNYSIYVENSFYFLQNV ALVAGGQFLHAIRDRNDRFLADGDQSGRRAYSIFSPRGGLLWDIAPDVQIFANISRSAEVPTFDTNTFMTPASSELDAQT ATTYEIGTRGHRADFKWDIAFYRAHIRNELQCLRTSPFSPCTVVNADRTVHQGIELGFGAAFLKGIAARKDLLWLDIAYT YNDFFFDNDTLYGNNKLPGVPPHYLRAEVLYKYPNGFHAGPNVEWMPRAYYADNANNLSIGSYALLNFRISYDPGKKWSG YLEGRNLLDTRYISTTITSGTADATSALFNSGYGRAIYGGIRFNW >Mature_765_residues MKSIAGLFSLLLLLWANTANAQNDIPYSFNLPAQPLSSTLNHLANITGIKLIYADEITRNHLSPPLHGNFTLAEALNQVL NKNRLKYEMVDNSMVVISQAAANTVLPEITITTDSSAAGNEASLTVPNTAQATANIQYTPGAVEVISDARFKSTPAQTIK DIVGWIPGVIAQPKSNIDNRISIRGSGLTRNYGNRGINMYMDGIPINTADGLFDVFEIDPGAYRYVEVFKGANALRYGAN SLGGAINLVTPTGYDASRFSGRVDTGSFGYMKGQVSTSGIHGPHDYFITASAQREDGYRDHSNGHMVLGSANFGYRFLPD AETRFYLNANTWRQRLPGELTKRMVLDSPRSADPEFVRQDQQRNIDSVRLANKTTLRFGPTTVDFGLFGHHRHVDHPIYR YLDYYVHDYGGFARATDDRLIAGFRNRFVAGANVHNGKINYKEYINPGDAVKSALAMSTVDKSQNYSIYVENSFYFLQNV ALVAGGQFLHAIRDRNDRFLADGDQSGRRAYSIFSPRGGLLWDIAPDVQIFANISRSAEVPTFDTNTFMTPASSELDAQT ATTYEIGTRGHRADFKWDIAFYRAHIRNELQCLRTSPFSPCTVVNADRTVHQGIELGFGAAFLKGIAARKDLLWLDIAYT YNDFFFDNDTLYGNNKLPGVPPHYLRAEVLYKYPNGFHAGPNVEWMPRAYYADNANNLSIGSYALLNFRISYDPGKKWSG YLEGRNLLDTRYISTTITSGTADATSALFNSGYGRAIYGGIRFNW
Specific function: Probable receptor, tonB-dependent [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1787723, Length=677, Percent_Identity=25.8493353028065, Blast_Score=159, Evalue=6e-40, Organism=Escherichia coli, GI1790743, Length=238, Percent_Identity=28.1512605042017, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 84943; Mature: 84943
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKSIAGLFSLLLLLWANTANAQNDIPYSFNLPAQPLSSTLNHLANITGIKLIYADEITRN CCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCEEEEEEECCHHHH HLSPPLHGNFTLAEALNQVLNKNRLKYEMVDNSMVVISQAAANTVLPEITITTDSSAAGN HCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCCCC EASLTVPNTAQATANIQYTPGAVEVISDARFKSTPAQTIKDIVGWIPGVIAQPKSNIDNR CCEEECCCCCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCE ISIRGSGLTRNYGNRGINMYMDGIPINTADGLFDVFEIDPGAYRYVEVFKGANALRYGAN EEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEHHHHCCCCHHHCCCH SLGGAINLVTPTGYDASRFSGRVDTGSFGYMKGQVSTSGIHGPHDYFITASAQREDGYRD HCCCEEEEECCCCCCHHHCCCCCCCCCCCEEECEEECCCCCCCCCEEEEEECCCCCCCCC HSNGHMVLGSANFGYRFLPDAETRFYLNANTWRQRLPGELTKRMVLDSPRSADPEFVRQD CCCCEEEEEECCCCEEECCCCCEEEEEECCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHH QQRNIDSVRLANKTTLRFGPTTVDFGLFGHHRHVDHPIYRYLDYYVHDYGGFARATDDRL HHCCCCCEEECCCEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCHH IAGFRNRFVAGANVHNGKINYKEYINPGDAVKSALAMSTVDKSQNYSIYVENSFYFLQNV HHHHHHCEEECCCCCCCEECHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCEEEEHHH ALVAGGQFLHAIRDRNDRFLADGDQSGRRAYSIFSPRGGLLWDIAPDVQIFANISRSAEV HHHHCCHHHHHHHCCCCCEEECCCCCCCEEEEEECCCCCEEEECCCCCEEEEECCCCCCC PTFDTNTFMTPASSELDAQTATTYEIGTRGHRADFKWDIAFYRAHIRNELQCLRTSPFSP CCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCC CTVVNADRTVHQGIELGFGAAFLKGIAARKDLLWLDIAYTYNDFFFDNDTLYGNNKLPGV EEEEECCHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEEEEECEEEECCCEEECCCCCCCC PPHYLRAEVLYKYPNGFHAGPNVEWMPRAYYADNANNLSIGSYALLNFRISYDPGKKWSG CHHHHEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCEECEEEEEEEEEEECCCCCCCC YLEGRNLLDTRYISTTITSGTADATSALFNSGYGRAIYGGIRFNW EECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCEEEECEEECC >Mature Secondary Structure MKSIAGLFSLLLLLWANTANAQNDIPYSFNLPAQPLSSTLNHLANITGIKLIYADEITRN CCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCEEEEEEECCHHHH HLSPPLHGNFTLAEALNQVLNKNRLKYEMVDNSMVVISQAAANTVLPEITITTDSSAAGN HCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCEEEEEECCCCCCC EASLTVPNTAQATANIQYTPGAVEVISDARFKSTPAQTIKDIVGWIPGVIAQPKSNIDNR CCEEECCCCCCCEEEEEECCCHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCE ISIRGSGLTRNYGNRGINMYMDGIPINTADGLFDVFEIDPGAYRYVEVFKGANALRYGAN EEEEECCCCCCCCCCCCEEEECCCCCCCCCCCEEEEECCCCCEEEHHHHCCCCHHHCCCH SLGGAINLVTPTGYDASRFSGRVDTGSFGYMKGQVSTSGIHGPHDYFITASAQREDGYRD HCCCEEEEECCCCCCHHHCCCCCCCCCCCEEECEEECCCCCCCCCEEEEEECCCCCCCCC HSNGHMVLGSANFGYRFLPDAETRFYLNANTWRQRLPGELTKRMVLDSPRSADPEFVRQD CCCCEEEEEECCCCEEECCCCCEEEEEECCHHHHHCCHHHHHHHHHCCCCCCCHHHHHHH QQRNIDSVRLANKTTLRFGPTTVDFGLFGHHRHVDHPIYRYLDYYVHDYGGFARATDDRL HHCCCCCEEECCCEEEEECCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCHH IAGFRNRFVAGANVHNGKINYKEYINPGDAVKSALAMSTVDKSQNYSIYVENSFYFLQNV HHHHHHCEEECCCCCCCEECHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEECCEEEEHHH ALVAGGQFLHAIRDRNDRFLADGDQSGRRAYSIFSPRGGLLWDIAPDVQIFANISRSAEV HHHHCCHHHHHHHCCCCCEEECCCCCCCEEEEEECCCCCEEEECCCCCEEEEECCCCCCC PTFDTNTFMTPASSELDAQTATTYEIGTRGHRADFKWDIAFYRAHIRNELQCLRTSPFSP CCCCCCCEECCCCCCCCCCCCEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCC CTVVNADRTVHQGIELGFGAAFLKGIAARKDLLWLDIAYTYNDFFFDNDTLYGNNKLPGV EEEEECCHHHHHHHHCCHHHHHHHHHHHCCCEEEEEEEEEECEEEECCCEEECCCCCCCC PPHYLRAEVLYKYPNGFHAGPNVEWMPRAYYADNANNLSIGSYALLNFRISYDPGKKWSG CHHHHEEEEEEECCCCCCCCCCCCCCCCEEECCCCCCCEECEEEEEEEEEEECCCCCCCC YLEGRNLLDTRYISTTITSGTADATSALFNSGYGRAIYGGIRFNW EECCCCEEEEEEEEEEECCCCCHHHHHHHHCCCCCEEEECEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]