| Definition | Nitrosomonas eutropha C91, complete genome. |
|---|---|
| Accession | NC_008344 |
| Length | 2,661,057 |
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The map label for this gene is ydfG [C]
Identifier: 114331945
GI number: 114331945
Start: 2089922
End: 2090740
Strand: Reverse
Name: ydfG [C]
Synonym: Neut_1974
Alternate gene names: 114331945
Gene position: 2090740-2089922 (Counterclockwise)
Preceding gene: 114331946
Following gene: 114331944
Centisome position: 78.57
GC content: 54.95
Gene sequence:
>819_bases ATGACTGAGATTAAAAATGATACCGGGATGCCGCAGGAATTCAGGAGAACAATTAACCTGGAGCAGTGTGATAAACGGGT ATTGATTACGGGAGCGACCAGTGCAATTGGCGCTGCTCTGGCACAGACCTATGCTCGCCCTGGTGTTGTTTTGTATCTGC ACGGCCGCCGACAGGATCGTCTGATTCAGGTTGCAGCTGATTGCGCCGCATGTGGTGCCCAGGTGATTACGCAATCACTG GATTTGTGTGATTTGTCAGCTTTGCATGACTGGCTGAAGAATCTGGGTGCACTGGATGTGGTGATCATTAATGCTGGCAT GAATACGCATGTTGGCAGCCAAGGCGAACCCGAACCTTGGGGTGAGGTGGAAGCTTTGCTAGATGTGAATCTGAAAGCTT CCATGCTGATTGCTCAATCTGTTTTGCCTGCGATGCGGGAGCGTGGTACGGGTCAGATCGCGTTCATGAGCTCCCTGGCG GGATATTTCGGGTTGCCCATGATCCCTGCCTACAGCGCCAGCAAGGCGGGCATCAAGGCTTATGGAGAAGCGTTGCGTGG CTGGTTGTCCCCCGAGGGTATTCATATCAATGTCATTATGCCCGGATATGTGGAATCCTCCATGTGCGATGCCATGCCGG GGCCTAAACCCTGGGTATGGTCACCGCAACAGGCGGCTTTGGCAATTCAGCGTGGGCTGGCGCGTGACCAGGCACGCATC AGCTTCCCGTTTCCATTGAACTGGGGTACCTGGTGGCTGGCCGTGCTGCCGGCAGCGTTATCGCACCGGATTGTACGCTG GCTGGGCTATGGTGCCTGA
Upstream 100 bases:
>100_bases GAAGGCAAATTACTTTCTGATTCCGATCAGCGTGACGGCTTGTCTGGGTTTTGGCATGATGCTGGTTGGTTTTTGGCAAG AAGAACGTTCAATCAAATAA
Downstream 100 bases:
>100_bases GTCGGAATTTATTTCGATATTAGCGGCTTTGCTGACGGGCCTGATGTTGTCGGTGGGGATAGAACAATTCATGATACCCC GTCCGCCATTGCGGCGACAC
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MTEIKNDTGMPQEFRRTINLEQCDKRVLITGATSAIGAALAQTYARPGVVLYLHGRRQDRLIQVAADCAACGAQVITQSL DLCDLSALHDWLKNLGALDVVIINAGMNTHVGSQGEPEPWGEVEALLDVNLKASMLIAQSVLPAMRERGTGQIAFMSSLA GYFGLPMIPAYSASKAGIKAYGEALRGWLSPEGIHINVIMPGYVESSMCDAMPGPKPWVWSPQQAALAIQRGLARDQARI SFPFPLNWGTWWLAVLPAALSHRIVRWLGYGA
Sequences:
>Translated_272_residues MTEIKNDTGMPQEFRRTINLEQCDKRVLITGATSAIGAALAQTYARPGVVLYLHGRRQDRLIQVAADCAACGAQVITQSL DLCDLSALHDWLKNLGALDVVIINAGMNTHVGSQGEPEPWGEVEALLDVNLKASMLIAQSVLPAMRERGTGQIAFMSSLA GYFGLPMIPAYSASKAGIKAYGEALRGWLSPEGIHINVIMPGYVESSMCDAMPGPKPWVWSPQQAALAIQRGLARDQARI SFPFPLNWGTWWLAVLPAALSHRIVRWLGYGA >Mature_271_residues TEIKNDTGMPQEFRRTINLEQCDKRVLITGATSAIGAALAQTYARPGVVLYLHGRRQDRLIQVAADCAACGAQVITQSLD LCDLSALHDWLKNLGALDVVIINAGMNTHVGSQGEPEPWGEVEALLDVNLKASMLIAQSVLPAMRERGTGQIAFMSSLAG YFGLPMIPAYSASKAGIKAYGEALRGWLSPEGIHINVIMPGYVESSMCDAMPGPKPWVWSPQQAALAIQRGLARDQARIS FPFPLNWGTWWLAVLPAALSHRIVRWLGYGA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI4503817, Length=256, Percent_Identity=26.5625, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI32483357, Length=194, Percent_Identity=28.3505154639175, Blast_Score=83, Evalue=2e-16, Organism=Homo sapiens, GI7706318, Length=199, Percent_Identity=30.1507537688442, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI126723750, Length=197, Percent_Identity=28.4263959390863, Blast_Score=79, Evalue=5e-15, Organism=Homo sapiens, GI223718074, Length=198, Percent_Identity=31.8181818181818, Blast_Score=78, Evalue=8e-15, Organism=Homo sapiens, GI20149619, Length=192, Percent_Identity=27.6041666666667, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI5031737, Length=226, Percent_Identity=27.8761061946903, Blast_Score=74, Evalue=9e-14, Organism=Homo sapiens, GI142976729, Length=259, Percent_Identity=24.3243243243243, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI32455239, Length=240, Percent_Identity=25.8333333333333, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI5031765, Length=240, Percent_Identity=25.8333333333333, Blast_Score=74, Evalue=2e-13, Organism=Homo sapiens, GI7705855, Length=206, Percent_Identity=24.7572815533981, Blast_Score=73, Evalue=4e-13, Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=27.319587628866, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI33667109, Length=192, Percent_Identity=28.125, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI126723191, Length=185, Percent_Identity=27.5675675675676, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI226371731, Length=210, Percent_Identity=27.1428571428571, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI7657478, Length=186, Percent_Identity=30.1075268817204, Blast_Score=66, Evalue=3e-11, Organism=Escherichia coli, GI1787820, Length=243, Percent_Identity=25.5144032921811, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1787335, Length=191, Percent_Identity=24.6073298429319, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1790717, Length=193, Percent_Identity=26.9430051813472, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787526, Length=205, Percent_Identity=30.7317073170732, Blast_Score=67, Evalue=8e-13, Organism=Escherichia coli, GI87082100, Length=195, Percent_Identity=30.2564102564103, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI1789378, Length=186, Percent_Identity=27.9569892473118, Blast_Score=64, Evalue=2e-11, Organism=Escherichia coli, GI2367365, Length=199, Percent_Identity=29.1457286432161, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1786701, Length=253, Percent_Identity=24.901185770751, Blast_Score=62, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17508895, Length=216, Percent_Identity=26.3888888888889, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17560676, Length=200, Percent_Identity=26.5, Blast_Score=78, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17559104, Length=207, Percent_Identity=28.0193236714976, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203117, Length=238, Percent_Identity=24.7899159663866, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17538486, Length=202, Percent_Identity=29.2079207920792, Blast_Score=71, Evalue=5e-13, Organism=Caenorhabditis elegans, GI193203115, Length=228, Percent_Identity=25, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17564282, Length=213, Percent_Identity=24.8826291079812, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17560220, Length=205, Percent_Identity=25.3658536585366, Blast_Score=67, Evalue=1e-11, Organism=Caenorhabditis elegans, GI17563726, Length=200, Percent_Identity=24.5, Blast_Score=65, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17560150, Length=200, Percent_Identity=26.5, Blast_Score=64, Evalue=6e-11, Organism=Caenorhabditis elegans, GI17561402, Length=210, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=7e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=194, Percent_Identity=29.3814432989691, Blast_Score=77, Evalue=4e-15, Organism=Drosophila melanogaster, GI21358495, Length=206, Percent_Identity=30.0970873786408, Blast_Score=97, Evalue=9e-21, Organism=Drosophila melanogaster, GI21355319, Length=222, Percent_Identity=27.027027027027, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI23397609, Length=187, Percent_Identity=28.8770053475936, Blast_Score=82, Evalue=5e-16, Organism=Drosophila melanogaster, GI24644339, Length=194, Percent_Identity=30.4123711340206, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24580925, Length=191, Percent_Identity=31.9371727748691, Blast_Score=79, Evalue=5e-15, Organism=Drosophila melanogaster, GI281364892, Length=246, Percent_Identity=28.4552845528455, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI24649181, Length=259, Percent_Identity=25.0965250965251, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24640442, Length=232, Percent_Identity=25.4310344827586, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI28571526, Length=190, Percent_Identity=27.3684210526316, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24584744, Length=191, Percent_Identity=29.3193717277487, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI28574402, Length=191, Percent_Identity=29.3193717277487, Blast_Score=71, Evalue=7e-13, Organism=Drosophila melanogaster, GI21357041, Length=186, Percent_Identity=28.494623655914, Blast_Score=71, Evalue=8e-13, Organism=Drosophila melanogaster, GI28571387, Length=201, Percent_Identity=30.8457711442786, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 29495; Mature: 29364
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEIKNDTGMPQEFRRTINLEQCDKRVLITGATSAIGAALAQTYARPGVVLYLHGRRQDR CCCCCCCCCCCHHHHHHCCHHHCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHH LIQVAADCAACGAQVITQSLDLCDLSALHDWLKNLGALDVVIINAGMNTHVGSQGEPEPW HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC GEVEALLDVNLKASMLIAQSVLPAMRERGTGQIAFMSSLAGYFGLPMIPAYSASKAGIKA HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH YGEALRGWLSPEGIHINVIMPGYVESSMCDAMPGPKPWVWSPQQAALAIQRGLARDQARI HHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE SFPFPLNWGTWWLAVLPAALSHRIVRWLGYGA ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TEIKNDTGMPQEFRRTINLEQCDKRVLITGATSAIGAALAQTYARPGVVLYLHGRRQDR CCCCCCCCCCHHHHHHCCHHHCCCEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCHH LIQVAADCAACGAQVITQSLDLCDLSALHDWLKNLGALDVVIINAGMNTHVGSQGEPEPW HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCC GEVEALLDVNLKASMLIAQSVLPAMRERGTGQIAFMSSLAGYFGLPMIPAYSASKAGIKA HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHH YGEALRGWLSPEGIHINVIMPGYVESSMCDAMPGPKPWVWSPQQAALAIQRGLARDQARI HHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCEE SFPFPLNWGTWWLAVLPAALSHRIVRWLGYGA ECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1730672 [H]