Click here to switch to the map view.

The map label for this gene is ttk [C]

Identifier: 114331907

GI number: 114331907

Start: 2047388

End: 2047996

Strand: Direct

Name: ttk [C]

Synonym: Neut_1933

Alternate gene names: 114331907

Gene position: 2047388-2047996 (Clockwise)

Preceding gene: 114331905

Following gene: 114331908

Centisome position: 76.94

GC content: 50.08

Gene sequence:

>609_bases
ATGAATCCTCATCCCAAATATCTCTCAGCTGATGAACGACGGGAAGTTACTGTAGAAGCTGTCGTTGAGCTTGCAAGCTC
GCAAAATCCCAGTGAGATCACTACTGCAGCAATCGCCAAACACATGAACCTGACGCAAGGAGCATTGTTCCGGCATTTCC
CAAACAAGGAAGCTATCTGGGAAGCAGTCATGAAGTGGGTTGTCGAGCGACTGTTAAAACGGATTGATCACTCTATTCAG
AGCATTACATCACCTCTGGCCGCCATGGAAGCCATGTTCATGAGTCATATTGAGTTTGTGGCAGAGTATCCCGGGGTTCC
AAGGATGATGTTTGGCGAGCTACAACGTGCAGAAGCGACTCCAGCCAAACAGCTTGTACAACTCCTGATCAAACGGTACA
GAGAACGTTTGCAACGGCTGATTGAAAACGGTAAGGCCTGCGGTGAATTATCACCCTCCCTGGAGAGTGAGGCTGCAACC
ATGCTGTTCATCGGAACAATCCAGGGACTTGTCATACAATCCATGCTGGCGGGTGAAGTTGCACGAATCCGCCGTGATGC
CCCGGGTGTTTTCGCCATCTATTGCCGTGGCATCAGGAAGGCTCTATGA

Upstream 100 bases:

>100_bases
CCCTGGATGATCGAAATATGCAGATCAAAAGCAGGTTGACTTTTTCACGCCTCAATTTAAGATAGTAATTAGTTACTATC
TTTTATGTGGTTATATATTT

Downstream 100 bases:

>100_bases
AATTCCCACACTTGCAGCGGCGCACGCTAGCATTGCTCGCAGTCATCACATTACTCCTGACGCTGTTTACATATATTGCC
CTGCAATCCGGGCCACTGGC

Product: transcriptional regulator, TetR family protein

Products: NA

Alternate protein names: TetR Family Transcriptional Regulator; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Tetr Family; Regulatory Protein TetR; HTH-Type Transcriptional Regulator; Transcriptional Regulator Of TetR Family Protein

Number of amino acids: Translated: 202; Mature: 202

Protein sequence:

>202_residues
MNPHPKYLSADERREVTVEAVVELASSQNPSEITTAAIAKHMNLTQGALFRHFPNKEAIWEAVMKWVVERLLKRIDHSIQ
SITSPLAAMEAMFMSHIEFVAEYPGVPRMMFGELQRAEATPAKQLVQLLIKRYRERLQRLIENGKACGELSPSLESEAAT
MLFIGTIQGLVIQSMLAGEVARIRRDAPGVFAIYCRGIRKAL

Sequences:

>Translated_202_residues
MNPHPKYLSADERREVTVEAVVELASSQNPSEITTAAIAKHMNLTQGALFRHFPNKEAIWEAVMKWVVERLLKRIDHSIQ
SITSPLAAMEAMFMSHIEFVAEYPGVPRMMFGELQRAEATPAKQLVQLLIKRYRERLQRLIENGKACGELSPSLESEAAT
MLFIGTIQGLVIQSMLAGEVARIRRDAPGVFAIYCRGIRKAL
>Mature_202_residues
MNPHPKYLSADERREVTVEAVVELASSQNPSEITTAAIAKHMNLTQGALFRHFPNKEAIWEAVMKWVVERLLKRIDHSIQ
SITSPLAAMEAMFMSHIEFVAEYPGVPRMMFGELQRAEATPAKQLVQLLIKRYRERLQRLIENGKACGELSPSLESEAAT
MLFIGTIQGLVIQSMLAGEVARIRRDAPGVFAIYCRGIRKAL

Specific function: Unknown. [C]

COG id: COG1309

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22690; Mature: 22690

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPHPKYLSADERREVTVEAVVELASSQNPSEITTAAIAKHMNLTQGALFRHFPNKEAIW
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHH
EAVMKWVVERLLKRIDHSIQSITSPLAAMEAMFMSHIEFVAEYPGVPRMMFGELQRAEAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
PAKQLVQLLIKRYRERLQRLIENGKACGELSPSLESEAATMLFIGTIQGLVIQSMLAGEV
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARIRRDAPGVFAIYCRGIRKAL
HHHHHCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNPHPKYLSADERREVTVEAVVELASSQNPSEITTAAIAKHMNLTQGALFRHFPNKEAIW
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHHCCCHHHHH
EAVMKWVVERLLKRIDHSIQSITSPLAAMEAMFMSHIEFVAEYPGVPRMMFGELQRAEAT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCC
PAKQLVQLLIKRYRERLQRLIENGKACGELSPSLESEAATMLFIGTIQGLVIQSMLAGEV
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ARIRRDAPGVFAIYCRGIRKAL
HHHHHCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA