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The map label for this gene is xerD [H]

Identifier: 114331692

GI number: 114331692

Start: 1808760

End: 1809677

Strand: Reverse

Name: xerD [H]

Synonym: Neut_1708

Alternate gene names: 114331692

Gene position: 1809677-1808760 (Counterclockwise)

Preceding gene: 114331693

Following gene: 114331690

Centisome position: 68.01

GC content: 49.56

Gene sequence:

>918_bases
ATGAATACCTTTGAAGCCAATATCCGGATGCTGGATGAGTTTACGGATGTCTTGTGGCTGGAAGATGGTTTGTCCCGTAA
TACACTAGCCAGTTATCGGGCTGATCTGATGCAGCTGGTTGAATGGCTCAGTCGGCGGGAACAGACAAATGGGTTATTGA
ATGACGTAACGCAGGCTGATTTATTGGCATTTCTGTCCGACAGGATTGCGCAAGGGGCGAAAGCAAGCACTGCCAGCAGG
GCATTAGCCTGTATCAGACGGTTTTACCGGTATCTGCTGCGCCAGGGAAAGATTCTTATCGATCCTGCTGTAAATATAGA
TAGCCCGAAAGTTTCTCGTCATCTCCCCGTGAGCCTGGCTGAATCTGAAGTAGAAGCGCTATTGGCAGTCTCGGATATCA
AGCAACCACTCGGATTGCGAGATCGTGCCATGCTGGAGATACTTTATGCTGCAGGGTTGCGTGTTTCCGAGCTGGTTAGT
TTGGCCATTTCTCAAGTCCGCCAGGATATGGGGGTGGTGCGTATTTTGGGTAAAGGCAACAAGGAACGCCTGATTCCTTT
GGGAGATGAGGCACTGTACTGGCTGGATTTATATCTGCGAGAAGCGCGTCCGATACTGCTGGCTGGTAAGCACAGCAATA
TGTTGTTTGTTACAACCCGGGGAGATGCCATGACTCGCCAGGCGTTCTGGTATCTGATCAAGCGCCATGCGCGACAGGCA
GGGATTGTAAAACAACTGTCGCCACATACGTTGCGTCATGCATTTGCTACCCATTTACTGAATCATGGTGCTGATTTGCG
AGTGGTCCAGCTGTTGTTAGGTCACAGCGATATTTCTACTACACAAATTTATACGCATGTTGCACGTGAACGACTCAGGC
AATTGCATGCCCGCCATCATCCAAGGGGAAAATTGTAG

Upstream 100 bases:

>100_bases
AAAATTCCTGCTCTGCCATTATTGATAGGAATTATCAATTAACCGAACTTGCTCGTACCCATAACTATGGGTTTCCTGTC
AATAAAACACCTTGTAATTG

Downstream 100 bases:

>100_bases
CGGCAACGGCGCCCTACAGTGGACCCATCAGTCTTATGGGCCGCACAATGACGGACACGCTAACTATTACAGTCGGCGCG
TTCGTCATCATAGACACACT

Product: tyrosine recombinase XerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 305

Protein sequence:

>305_residues
MNTFEANIRMLDEFTDVLWLEDGLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQADLLAFLSDRIAQGAKASTASR
ALACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLAESEVEALLAVSDIKQPLGLRDRAMLEILYAAGLRVSELVS
LAISQVRQDMGVVRILGKGNKERLIPLGDEALYWLDLYLREARPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQA
GIVKQLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRQLHARHHPRGKL

Sequences:

>Translated_305_residues
MNTFEANIRMLDEFTDVLWLEDGLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQADLLAFLSDRIAQGAKASTASR
ALACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLAESEVEALLAVSDIKQPLGLRDRAMLEILYAAGLRVSELVS
LAISQVRQDMGVVRILGKGNKERLIPLGDEALYWLDLYLREARPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQA
GIVKQLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRQLHARHHPRGKL
>Mature_305_residues
MNTFEANIRMLDEFTDVLWLEDGLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQADLLAFLSDRIAQGAKASTASR
ALACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLAESEVEALLAVSDIKQPLGLRDRAMLEILYAAGLRVSELVS
LAISQVRQDMGVVRILGKGNKERLIPLGDEALYWLDLYLREARPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQA
GIVKQLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRQLHARHHPRGKL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=294, Percent_Identity=56.4625850340136, Blast_Score=327, Evalue=7e-91,
Organism=Escherichia coli, GI1790244, Length=301, Percent_Identity=37.8737541528239, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1790767, Length=172, Percent_Identity=30.2325581395349, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1790768, Length=174, Percent_Identity=29.8850574712644, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 34604; Mature: 34604

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTFEANIRMLDEFTDVLWLEDGLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQAD
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LLAFLSDRIAQGAKASTASRALACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHH
ESEVEALLAVSDIKQPLGLRDRAMLEILYAAGLRVSELVSLAISQVRQDMGVVRILGKGN
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEECCCC
KERLIPLGDEALYWLDLYLREARPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQA
CCCEEECCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
GIVKQLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRQLHARHH
HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
PRGKL
CCCCC
>Mature Secondary Structure
MNTFEANIRMLDEFTDVLWLEDGLSRNTLASYRADLMQLVEWLSRREQTNGLLNDVTQAD
CCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
LLAFLSDRIAQGAKASTASRALACIRRFYRYLLRQGKILIDPAVNIDSPKVSRHLPVSLA
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCHHHH
ESEVEALLAVSDIKQPLGLRDRAMLEILYAAGLRVSELVSLAISQVRQDMGVVRILGKGN
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCEEEECCCC
KERLIPLGDEALYWLDLYLREARPILLAGKHSNMLFVTTRGDAMTRQAFWYLIKRHARQA
CCCEEECCCHHHHHHHHHHHHCCCEEEEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHH
GIVKQLSPHTLRHAFATHLLNHGADLRVVQLLLGHSDISTTQIYTHVARERLRQLHARHH
HHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
PRGKL
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]