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The map label for this gene is ypjD [C]

Identifier: 114331693

GI number: 114331693

Start: 1809799

End: 1810644

Strand: Reverse

Name: ypjD [C]

Synonym: Neut_1709

Alternate gene names: 114331693

Gene position: 1810644-1809799 (Counterclockwise)

Preceding gene: 114331696

Following gene: 114331692

Centisome position: 68.04

GC content: 48.58

Gene sequence:

>846_bases
ATGCCCAGTATTCTAACTTATCTCAGTACTTCATTGCTTTACGGGATTGCCGGATGGTATTTCTGGCAAACCTTGCGTAC
AGTTGCGCCAGTGTTGCAGGCGAATGCTGCAGGAACGGTTCCGAATGTGAAGTTACAGCAGTTTATGATGCTCATTCCTC
TGGTAATGCATGGCGTGGTGCTTTACCGTTCGGTATTTATGGATGATATGCTGAGCTTTGGTGTCGGCAATGCCATTTCA
GCTATTGTATGGCTGACTGCCTTGATTTATTGGGTATCAGGTTTTTTATCCTCGCTGCAGGGATTACAAAATCTCATCGC
GCCGATTTCTGCCATAGCGGCGATCGCTGTTCTGATTCCGCTGTTACTGCCCTCCGTCCATCCGCTAGCACATGCCGGGA
TGACGGCTTTCAAGGCGCATTTGCTGACAGCAATGCTCGCTTACAGTCTGTTCACGATTGCTGCCCTGCATGCAGCTCTT
ATGACGCTTCTTGAGCGTCGCCTGCATCATTCTGTTGTGTCCTCGCTCTTTGTACAGTTGCCACCGCTGCTGGTGATGGA
TAAAATGCTTTTCCGCCTGGTATGGATCGGGTTTATTCTACTTAGTCTCACTTTGCTTAGCGGTATCGTGTTTTCAGAGG
AGCTGTTTGGCAAATCGGTACCGTTTACGCACAAGTCATTATTTGGTTTCATTTCCTGGGGAATATTCGCAGCCCTGCTC
GCTGGTAGACATCTGTACGGATGGCGTGGACGTACTGCCATCCGCTGGATGCTGGCTGGATTTGTTGCGCTTGTTCTATC
CTATATTGGTAGCAAGTTTGTACTGGAAATTATCCTCAATCGCTGA

Upstream 100 bases:

>100_bases
CCTATGCTAAACTTCATGGAAACTGTCAAACAGCACTTCAGCTTTATCCGGACGAAGGGTAGACTGGTTGTTTTCCACCA
ATTGTTCAGATAGATTGCCA

Downstream 100 bases:

>100_bases
TCGGATTTGTGGAATAGTTTGAAAATTCCTGCTCTGCCATTATTGATAGGAATTATCAATTAACCGAACTTGCTCGTACC
CATAACTATGGGTTTCCTGT

Product: cytochrome c assembly protein

Products: NA

Alternate protein names: Cytochrome C Assembly Family Protein; Transmembrane Protein; Cytochrome C-Type Biogenesis Protein CcsB; ABC Transporter Permease; Metal Dependent Phosphohydrolase; CcsA-Related Protein; ABC-Type Transport System Permease Component; Cytochrome C Assembly-Like Protein; ResC/HemX-Like Cytochrome C Biogenesis Membrane Protein; Inner Membrane Protein Ypjd; Inner Membrane Protein YpjD; CcmF/CcyK/CcsA Family Cytochrome C Biogenesis Protein; CytoChrome C Assembly Protein; ABC-Transport Permease; ABC-Type Transport System Permease Component-Like Protein; CcmC Protein; Cytochrome Assembly Protein; ABC-Type Transport System Permease Component; Cytochrome C Assembly Transmembrane Protein; Cytochrome C Biogenesis Protein; Inner Membrane Protein Cytochrome C Assembly Protein

Number of amino acids: Translated: 281; Mature: 280

Protein sequence:

>281_residues
MPSILTYLSTSLLYGIAGWYFWQTLRTVAPVLQANAAGTVPNVKLQQFMMLIPLVMHGVVLYRSVFMDDMLSFGVGNAIS
AIVWLTALIYWVSGFLSSLQGLQNLIAPISAIAAIAVLIPLLLPSVHPLAHAGMTAFKAHLLTAMLAYSLFTIAALHAAL
MTLLERRLHHSVVSSLFVQLPPLLVMDKMLFRLVWIGFILLSLTLLSGIVFSEELFGKSVPFTHKSLFGFISWGIFAALL
AGRHLYGWRGRTAIRWMLAGFVALVLSYIGSKFVLEIILNR

Sequences:

>Translated_281_residues
MPSILTYLSTSLLYGIAGWYFWQTLRTVAPVLQANAAGTVPNVKLQQFMMLIPLVMHGVVLYRSVFMDDMLSFGVGNAIS
AIVWLTALIYWVSGFLSSLQGLQNLIAPISAIAAIAVLIPLLLPSVHPLAHAGMTAFKAHLLTAMLAYSLFTIAALHAAL
MTLLERRLHHSVVSSLFVQLPPLLVMDKMLFRLVWIGFILLSLTLLSGIVFSEELFGKSVPFTHKSLFGFISWGIFAALL
AGRHLYGWRGRTAIRWMLAGFVALVLSYIGSKFVLEIILNR
>Mature_280_residues
PSILTYLSTSLLYGIAGWYFWQTLRTVAPVLQANAAGTVPNVKLQQFMMLIPLVMHGVVLYRSVFMDDMLSFGVGNAISA
IVWLTALIYWVSGFLSSLQGLQNLIAPISAIAAIAVLIPLLLPSVHPLAHAGMTAFKAHLLTAMLAYSLFTIAALHAALM
TLLERRLHHSVVSSLFVQLPPLLVMDKMLFRLVWIGFILLSLTLLSGIVFSEELFGKSVPFTHKSLFGFISWGIFAALLA
GRHLYGWRGRTAIRWMLAGFVALVLSYIGSKFVLEIILNR

Specific function: Unknown

COG id: COG4137

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI145693174, Length=139, Percent_Identity=30.9352517985612, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31003; Mature: 30872

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
PSILTYLSTSLLYGIAGWYFWQTLRTVAPVLQANAAGTVPNVKLQQFMMLIPLVMHGVV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
LYRSVFMDDMLSFGVGNAISAIVWLTALIYWVSGFLSSLQGLQNLIAPISAIAAIAVLIP
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLLPSVHPLAHAGMTAFKAHLLTAMLAYSLFTIAALHAALMTLLERRLHHSVVSSLFVQL
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PPLLVMDKMLFRLVWIGFILLSLTLLSGIVFSEELFGKSVPFTHKSLFGFISWGIFAALL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
AGRHLYGWRGRTAIRWMLAGFVALVLSYIGSKFVLEIILNR
HCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA