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The map label for this gene is petB [H]

Identifier: 114331109

GI number: 114331109

Start: 1152306

End: 1153553

Strand: Direct

Name: petB [H]

Synonym: Neut_1111

Alternate gene names: 114331109

Gene position: 1152306-1153553 (Clockwise)

Preceding gene: 114331108

Following gene: 114331110

Centisome position: 43.3

GC content: 41.27

Gene sequence:

>1248_bases
ATGAATAAACAGCAAAATTCAATGATAAAATGGATAGACGAGCGTTTTCCATTGACTTCTACTTGGAAAGCGCATCTATC
TGAATATTATGCTCCCAAGAATTTCAATTTTTGGTATTACTTTGGATCGTTAGCGTTATTGGTGCTGGTTAATCAGCTGC
TGACAGGTATTTTTCTGACCATGAGTTATAAACCAGATGCCGGAATGGCCTTCGCGTCGGTTGAATATATCATGCGAGAT
GTGGATTTTGGCTGGTTGATCAGATATATGCATTCAACTGGTGCTTCCATGTTTTTTGTGGTGGTTTATCTGCACATGTT
TCGCGGAATGATGTACGGATCTTACCGAAAGCCGCGTGAATTGCTGTGGTTGATAGGTATGGCCATATTTTTTGTTCTGA
TGAGCCTGGCCTTTACAGGATATATTTTGCCATGGGGGCAAATGTCCTATTGGGGAGCTCAGGTTATCGTCAGTATGTTC
GGAGCAATACCACTTATAGGCGATACCTTGTCAAACTGGATTCTCGGTGACTTCATGCTGTCGGATGCAGCTTTAAACCG
GTTTTTTGCTTATCACGTGGTAACACTTCCTGTTTTGATTGTAGTGCTGGTGTTTGTACATATCATTGCTTTGCACGAAA
CGGGATCCAATAATCCTGATGGTATAGAAATCAAGGCTAACAAAGATCCACAAACCGGGATCCCGGTCGATGGCATACCG
TTTCATCCTTATTACACGGTCAAGGATATCTTTGGAGCAGTGGGATTTTTGATTGTGTTCTGTGGGATTATTTTCTTTGC
ACCAGAGATGGGTGGATATTTTCTGGAAGATAATAATTTTATACCAGCCAATCCTTTACATACCCCGGATCATATTGCTC
CAGTATGGTATTTCACTCCATATTACTCCATGTTGCGTGCAGTGACAGTGAACTTTTTGGGTGTGGATGCCAAATTATGG
GGTGTGATTTTAATGGCGGCGGCTGTAGTTATCTTTTGTTTCCTGCCTTGGCTGGACCGCAGTCCGGTTAAATCAATCCG
CTATAAAGGACCCTATTTTAAAATTGCGTTGACTCTTTTTGTGATCAGCTTTTTTGTTCTCGGGTGGTTGGGGACTAAAT
CGGTAACACCTTTGTATACTTTACTGGCACAAATCTTTACTACGATTTATTTTGCTTTCTTTCTGCTGATGCCGTGGTAT
AGCAAAATAGATAAAGTTAAACCTGAACCAGAGAACGTAACAAAATGA

Upstream 100 bases:

>100_bases
AAAAACGTACCGGCTCCTACCAATCTGGTAGTACCTCCTTATACCTATTTAAGTGATAACCAACTTTTGGTTGGTTCTGA
CAGTAAAGAGTCCGCCTAAA

Downstream 100 bases:

>100_bases
GAATGATAAAAATTTTATTACTGGCTGTATTACTAACTCCTTTTGTCGCACATTCTTCCGGGCAGGAAGTTGAGTTAGAC
AAAGCTCCTATAGATAGGAC

Product: cytochrome b/b6 domain-containing protein

Products: Q; ferrocytochrome c

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 415

Protein sequence:

>415_residues
MNKQQNSMIKWIDERFPLTSTWKAHLSEYYAPKNFNFWYYFGSLALLVLVNQLLTGIFLTMSYKPDAGMAFASVEYIMRD
VDFGWLIRYMHSTGASMFFVVVYLHMFRGMMYGSYRKPRELLWLIGMAIFFVLMSLAFTGYILPWGQMSYWGAQVIVSMF
GAIPLIGDTLSNWILGDFMLSDAALNRFFAYHVVTLPVLIVVLVFVHIIALHETGSNNPDGIEIKANKDPQTGIPVDGIP
FHPYYTVKDIFGAVGFLIVFCGIIFFAPEMGGYFLEDNNFIPANPLHTPDHIAPVWYFTPYYSMLRAVTVNFLGVDAKLW
GVILMAAAVVIFCFLPWLDRSPVKSIRYKGPYFKIALTLFVISFFVLGWLGTKSVTPLYTLLAQIFTTIYFAFFLLMPWY
SKIDKVKPEPENVTK

Sequences:

>Translated_415_residues
MNKQQNSMIKWIDERFPLTSTWKAHLSEYYAPKNFNFWYYFGSLALLVLVNQLLTGIFLTMSYKPDAGMAFASVEYIMRD
VDFGWLIRYMHSTGASMFFVVVYLHMFRGMMYGSYRKPRELLWLIGMAIFFVLMSLAFTGYILPWGQMSYWGAQVIVSMF
GAIPLIGDTLSNWILGDFMLSDAALNRFFAYHVVTLPVLIVVLVFVHIIALHETGSNNPDGIEIKANKDPQTGIPVDGIP
FHPYYTVKDIFGAVGFLIVFCGIIFFAPEMGGYFLEDNNFIPANPLHTPDHIAPVWYFTPYYSMLRAVTVNFLGVDAKLW
GVILMAAAVVIFCFLPWLDRSPVKSIRYKGPYFKIALTLFVISFFVLGWLGTKSVTPLYTLLAQIFTTIYFAFFLLMPWY
SKIDKVKPEPENVTK
>Mature_415_residues
MNKQQNSMIKWIDERFPLTSTWKAHLSEYYAPKNFNFWYYFGSLALLVLVNQLLTGIFLTMSYKPDAGMAFASVEYIMRD
VDFGWLIRYMHSTGASMFFVVVYLHMFRGMMYGSYRKPRELLWLIGMAIFFVLMSLAFTGYILPWGQMSYWGAQVIVSMF
GAIPLIGDTLSNWILGDFMLSDAALNRFFAYHVVTLPVLIVVLVFVHIIALHETGSNNPDGIEIKANKDPQTGIPVDGIP
FHPYYTVKDIFGAVGFLIVFCGIIFFAPEMGGYFLEDNNFIPANPLHTPDHIAPVWYFTPYYSMLRAVTVNFLGVDAKLW
GVILMAAAVVIFCFLPWLDRSPVKSIRYKGPYFKIALTLFVISFFVLGWLGTKSVTPLYTLLAQIFTTIYFAFFLLMPWY
SKIDKVKPEPENVTK

Specific function: Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis [H]

COG id: COG1290

COG function: function code C; Cytochrome b subunit of the bc complex

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome b family [H]

Homologues:

Organism=Homo sapiens, GI251831119, Length=404, Percent_Identity=38.6138613861386, Blast_Score=261, Evalue=7e-70,
Organism=Saccharomyces cerevisiae, GI6226529, Length=376, Percent_Identity=42.0212765957447, Blast_Score=263, Evalue=4e-71,
Organism=Saccharomyces cerevisiae, GI6226532, Length=242, Percent_Identity=42.9752066115703, Blast_Score=197, Evalue=4e-51,
Organism=Saccharomyces cerevisiae, GI6226531, Length=152, Percent_Identity=48.0263157894737, Blast_Score=148, Evalue=1e-36,
Organism=Saccharomyces cerevisiae, GI6226530, Length=137, Percent_Identity=48.1751824817518, Blast_Score=124, Evalue=4e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016175
- InterPro:   IPR005798
- InterPro:   IPR005797
- InterPro:   IPR016174 [H]

Pfam domain/function: PF00032 Cytochrom_B_C; PF00033 Cytochrom_B_N [H]

EC number: 1.10.2.2

Molecular weight: Translated: 47543; Mature: 47543

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: PS51002 CYTB_NTER ; PS51003 CYTB_CTER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure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HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: QH2; ferricytochrome c

Specific reaction: QH2 + 2 ferricytochrome c = Q + 2 ferrocytochrome c

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA