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The map label for this gene is ybhS [H]

Identifier: 114331010

GI number: 114331010

Start: 1039720

End: 1040868

Strand: Reverse

Name: ybhS [H]

Synonym: Neut_1008

Alternate gene names: 114331010

Gene position: 1040868-1039720 (Counterclockwise)

Preceding gene: 114331011

Following gene: 114331009

Centisome position: 39.11

GC content: 49.0

Gene sequence:

>1149_bases
GTGAGTAATACAGCTAACCAGGAACAAATAACAGTACGCCGTTTTGATCCGGTGCGTTTCCTTGCATTGGTACGTAAGGA
AAGTCTGCAAGCTATGCGTGATCCATCAACGTTGCTGATCGCTCTAGTGCTGCCACTGATTCTACTGTTTCTATTTGCCT
ATGCTGTCTCACTGGATGTGCGCCATGTGCGCATCGGTGTCGTGCTGGAATCCCCGGGAGCAATCGCACGCACGCTGGCA
GAAGCATTTTCCGGCACGCTTTATCTGGATGTAACCTACGCACATGATCGTCGCGAAGTCGCCGAAAAATTAGTTAGTGG
AGAATTACGTGGTTATGTCGTCATTTCACAGAATTTTGAGCAATATTTTGCGGAAACAGGCCAACCACTGGTGCAGATTA
TCACTGATGGTTCACAACCCAACACGGCCAATTTTGTTGCCAATTACAGCCAAGGAGTGATACAAACCTGGGCAGCTGAT
CTTACTGGAATAACTCCTATACCGGCGGTTCAACTGGAGCCGCGTTACTGGTTTAACCCCGAACTGGCCAGCCGGCGCGC
ACTGGTACCAGGCGCCATTGCCATCATCATGACTATTATTGGCACCCTGTTGACAGCGCTAGTAGTGGCTCGTGAATGGG
AGCGCGGCACAATGGAGGTTATCTTGTCCACACCGTCATCCGTGCTAGAAATTTTAACCGGCAAGCTGTTGCCCTATTTC
GTACTAGGCATGCTTTCCACACTGATGGCAGCAACGCTAGCCGTATTCCTATTTGACGTACCATTACGAGGCTCACTGCT
TGCTCTGTTGTTGCTTTCAGCTGTTTTCATGATCCCGGCTCTGGGTCAGGGATTATTGATTTCATCACTAACACGCAACC
AGTTCCTTGCTTCACAACTAGCCTTGTTTTCCGGCTATCTACCTGCATTTATGCTATCTGGTTTTCTGTTCGAAATCGAT
GCTATGCCCGCCCCTGTCCGGGCAATTACCTGGCTGATTCCAGCACGTTATTTCGTCTCTTCACTGAAAACAATATTCCT
GGCAGGCGATATTTGGGGTGTTTTTATCCCTGATCTGATCGGTATGGCGACAATTGGCCTGGTGTTTTTTCTGATTGCGC
AGCGCCACACACGTAAAAGTTTGGAGTAG

Upstream 100 bases:

>100_bases
TGAAAAAAAATGCGGCCAACACTGATTGCTCTGATCCAACCATGGAAGATGCTTTTATTCACCTGATAGAAACTTCAGCA
CTAGCTGATGAAGCGGAAGC

Downstream 100 bases:

>100_bases
CGACGATGTCTTACCAGCATTTCCGCGTTATTCTCATTCGCCTGTACGCTCAGTTCGTCAAGGAGCTGCTCTGTATCCTG
CGTGATCCACGTAACCGAGT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 382; Mature: 381

Protein sequence:

>382_residues
MSNTANQEQITVRRFDPVRFLALVRKESLQAMRDPSTLLIALVLPLILLFLFAYAVSLDVRHVRIGVVLESPGAIARTLA
EAFSGTLYLDVTYAHDRREVAEKLVSGELRGYVVISQNFEQYFAETGQPLVQIITDGSQPNTANFVANYSQGVIQTWAAD
LTGITPIPAVQLEPRYWFNPELASRRALVPGAIAIIMTIIGTLLTALVVAREWERGTMEVILSTPSSVLEILTGKLLPYF
VLGMLSTLMAATLAVFLFDVPLRGSLLALLLLSAVFMIPALGQGLLISSLTRNQFLASQLALFSGYLPAFMLSGFLFEID
AMPAPVRAITWLIPARYFVSSLKTIFLAGDIWGVFIPDLIGMATIGLVFFLIAQRHTRKSLE

Sequences:

>Translated_382_residues
MSNTANQEQITVRRFDPVRFLALVRKESLQAMRDPSTLLIALVLPLILLFLFAYAVSLDVRHVRIGVVLESPGAIARTLA
EAFSGTLYLDVTYAHDRREVAEKLVSGELRGYVVISQNFEQYFAETGQPLVQIITDGSQPNTANFVANYSQGVIQTWAAD
LTGITPIPAVQLEPRYWFNPELASRRALVPGAIAIIMTIIGTLLTALVVAREWERGTMEVILSTPSSVLEILTGKLLPYF
VLGMLSTLMAATLAVFLFDVPLRGSLLALLLLSAVFMIPALGQGLLISSLTRNQFLASQLALFSGYLPAFMLSGFLFEID
AMPAPVRAITWLIPARYFVSSLKTIFLAGDIWGVFIPDLIGMATIGLVFFLIAQRHTRKSLE
>Mature_381_residues
SNTANQEQITVRRFDPVRFLALVRKESLQAMRDPSTLLIALVLPLILLFLFAYAVSLDVRHVRIGVVLESPGAIARTLAE
AFSGTLYLDVTYAHDRREVAEKLVSGELRGYVVISQNFEQYFAETGQPLVQIITDGSQPNTANFVANYSQGVIQTWAADL
TGITPIPAVQLEPRYWFNPELASRRALVPGAIAIIMTIIGTLLTALVVAREWERGTMEVILSTPSSVLEILTGKLLPYFV
LGMLSTLMAATLAVFLFDVPLRGSLLALLLLSAVFMIPALGQGLLISSLTRNQFLASQLALFSGYLPAFMLSGFLFEIDA
MPAPVRAITWLIPARYFVSSLKTIFLAGDIWGVFIPDLIGMATIGLVFFLIAQRHTRKSLE

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787011, Length=337, Percent_Identity=49.8516320474777, Blast_Score=341, Evalue=5e-95,
Organism=Escherichia coli, GI48994943, Length=375, Percent_Identity=31.2, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1787010, Length=365, Percent_Identity=29.041095890411, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI226510979, Length=290, Percent_Identity=28.2758620689655, Blast_Score=72, Evalue=4e-14,
Organism=Drosophila melanogaster, GI24650855, Length=378, Percent_Identity=25.3968253968254, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24650853, Length=378, Percent_Identity=25.1322751322751, Blast_Score=74, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 42009; Mature: 41878

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNTANQEQITVRRFDPVRFLALVRKESLQAMRDPSTLLIALVLPLILLFLFAYAVSLDV
CCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCE
RHVRIGVVLESPGAIARTLAEAFSGTLYLDVTYAHDRREVAEKLVSGELRGYVVISQNFE
EEEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECHHHHHHHHHHHCCCCCEEEEEECCHH
QYFAETGQPLVQIITDGSQPNTANFVANYSQGVIQTWAADLTGITPIPAVQLEPRYWFNP
HHHHHCCCHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC
ELASRRALVPGAIAIIMTIIGTLLTALVVAREWERGTMEVILSTPSSVLEILTGKLLPYF
CHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHH
VLGMLSTLMAATLAVFLFDVPLRGSLLALLLLSAVFMIPALGQGLLISSLTRNQFLASQL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ALFSGYLPAFMLSGFLFEIDAMPAPVRAITWLIPARYFVSSLKTIFLAGDIWGVFIPDLI
HHHHCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMATIGLVFFLIAQRHTRKSLE
HHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SNTANQEQITVRRFDPVRFLALVRKESLQAMRDPSTLLIALVLPLILLFLFAYAVSLDV
CCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCE
RHVRIGVVLESPGAIARTLAEAFSGTLYLDVTYAHDRREVAEKLVSGELRGYVVISQNFE
EEEEEEEEECCCCHHHHHHHHHHCCEEEEEEEECHHHHHHHHHHHCCCCCEEEEEECCHH
QYFAETGQPLVQIITDGSQPNTANFVANYSQGVIQTWAADLTGITPIPAVQLEPRYWFNP
HHHHHCCCHHHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCC
ELASRRALVPGAIAIIMTIIGTLLTALVVAREWERGTMEVILSTPSSVLEILTGKLLPYF
CHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHH
VLGMLSTLMAATLAVFLFDVPLRGSLLALLLLSAVFMIPALGQGLLISSLTRNQFLASQL
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
ALFSGYLPAFMLSGFLFEIDAMPAPVRAITWLIPARYFVSSLKTIFLAGDIWGVFIPDLI
HHHHCCHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMATIGLVFFLIAQRHTRKSLE
HHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]