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The map label for this gene is ybhR [H]

Identifier: 114331009

GI number: 114331009

Start: 1038590

End: 1039714

Strand: Reverse

Name: ybhR [H]

Synonym: Neut_1007

Alternate gene names: 114331009

Gene position: 1039714-1038590 (Counterclockwise)

Preceding gene: 114331010

Following gene: 114331008

Centisome position: 39.07

GC content: 49.78

Gene sequence:

>1125_bases
ATGTCTTACCAGCATTTCCGCGTTATTCTCATTCGCCTGTACGCTCAGTTCGTCAAGGAGCTGCTCTGTATCCTGCGTGA
TCCACGTAACCGAGTCGTAGTGTTTGTGCCACCATTGTTACAACTGCTGATATTTTCTTACGCCGCTACCCTGGAAGTAA
GCAATGTCGATATTGCTGTGTATAACCAGGATACGGGACGAGAGGCACAGGAAGTCGTATGGCGCCTGGAAGCTGCCCGC
TTCATTACACAGGTTCATCATGTCCACAGTAATACGGTGTTACGTGAGCAACTAGCACAAGGCAAAGTAATTGCTGCCAT
TGCTATTCCATCTGATTTCTCTCGTACTGTTGCGATTGAGGGAAGTGGCCGTGCACAGGTATTAGTCGATGGTCGCCGTA
GTAATTCCGGCCAGATTGTTGTCGGTTATCTCTCCGTCATCGCCAAAAACATTCACTTTACAGCTGATCCTACTCCACTA
CCGGAAACATCCGTAGTGGTACGTCACTGGTTCAATCCCAATCTGGTTTATCTCTGGTTCATGGTTCCCTGTTTAACCGG
TACACTCGCCTTTTTTAGTGCACTCATGATCACAGCACTTTCTATTGCCCGGGAACGCGAGCTTGGAACCTTCGATCAAC
TGCTGGTATCGCCCGCTTCAACGCTGGAAATTATTTTATCTAAATCACTACCGGCACTGGTCATCAGCACCTTACTCGCA
CTTTTAATGATCAGCATGGCAATCTGGTTTTTTCGCATTCCATTTACGGGATCATTTGGATTATTACTCATCGGACTCAT
CCTGTTTATCCTGTCGGCAGTAGGAATCGGCTTGGTGGTTTCTGCCATCAGCATGACGCAACAGCAGGCCATTCTGGGTG
GATTCGTTATTGGCGTACCGACCGTATTGATCTCCGGCTTTGCCACACCAGTAGAGAACATGCCTGCCGTCTTGCAATGG
CTGGCCCAGGCTATTCCGCTGACGCACTTCTTGGTCATCATCGAAGGCAGTTTTCTCAAGGCGATGCCGCCAGGAGACAT
TCTTGCCAGCCTGTGGCCACTGGCAGTGATCGCCGCGGTGACACTCACGATGGCGACCGTATTTGTCCGAGGACGCCTAC
AATGA

Upstream 100 bases:

>100_bases
GGGGTGTTTTTATCCCTGATCTGATCGGTATGGCGACAATTGGCCTGGTGTTTTTTCTGATTGCGCAGCGCCACACACGT
AAAAGTTTGGAGTAGCGACG

Downstream 100 bases:

>100_bases
GATCTGGACTGTGTATGTCATCGCCATGGAGAACGATCATCTGCCCCGGTGCCAATAAACAAGGACGCCTGCCCATGCTG
GTGCTGGATTTTGCGATGCT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 373

Protein sequence:

>374_residues
MSYQHFRVILIRLYAQFVKELLCILRDPRNRVVVFVPPLLQLLIFSYAATLEVSNVDIAVYNQDTGREAQEVVWRLEAAR
FITQVHHVHSNTVLREQLAQGKVIAAIAIPSDFSRTVAIEGSGRAQVLVDGRRSNSGQIVVGYLSVIAKNIHFTADPTPL
PETSVVVRHWFNPNLVYLWFMVPCLTGTLAFFSALMITALSIARERELGTFDQLLVSPASTLEIILSKSLPALVISTLLA
LLMISMAIWFFRIPFTGSFGLLLIGLILFILSAVGIGLVVSAISMTQQQAILGGFVIGVPTVLISGFATPVENMPAVLQW
LAQAIPLTHFLVIIEGSFLKAMPPGDILASLWPLAVIAAVTLTMATVFVRGRLQ

Sequences:

>Translated_374_residues
MSYQHFRVILIRLYAQFVKELLCILRDPRNRVVVFVPPLLQLLIFSYAATLEVSNVDIAVYNQDTGREAQEVVWRLEAAR
FITQVHHVHSNTVLREQLAQGKVIAAIAIPSDFSRTVAIEGSGRAQVLVDGRRSNSGQIVVGYLSVIAKNIHFTADPTPL
PETSVVVRHWFNPNLVYLWFMVPCLTGTLAFFSALMITALSIARERELGTFDQLLVSPASTLEIILSKSLPALVISTLLA
LLMISMAIWFFRIPFTGSFGLLLIGLILFILSAVGIGLVVSAISMTQQQAILGGFVIGVPTVLISGFATPVENMPAVLQW
LAQAIPLTHFLVIIEGSFLKAMPPGDILASLWPLAVIAAVTLTMATVFVRGRLQ
>Mature_373_residues
SYQHFRVILIRLYAQFVKELLCILRDPRNRVVVFVPPLLQLLIFSYAATLEVSNVDIAVYNQDTGREAQEVVWRLEAARF
ITQVHHVHSNTVLREQLAQGKVIAAIAIPSDFSRTVAIEGSGRAQVLVDGRRSNSGQIVVGYLSVIAKNIHFTADPTPLP
ETSVVVRHWFNPNLVYLWFMVPCLTGTLAFFSALMITALSIARERELGTFDQLLVSPASTLEIILSKSLPALVISTLLAL
LMISMAIWFFRIPFTGSFGLLLIGLILFILSAVGIGLVVSAISMTQQQAILGGFVIGVPTVLISGFATPVENMPAVLQWL
AQAIPLTHFLVIIEGSFLKAMPPGDILASLWPLAVIAAVTLTMATVFVRGRLQ

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=365, Percent_Identity=40, Blast_Score=281, Evalue=3e-77,
Organism=Escherichia coli, GI48994943, Length=352, Percent_Identity=28.4090909090909, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787011, Length=342, Percent_Identity=28.0701754385965, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI226510979, Length=338, Percent_Identity=27.2189349112426, Blast_Score=91, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 40999; Mature: 40868

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYQHFRVILIRLYAQFVKELLCILRDPRNRVVVFVPPLLQLLIFSYAATLEVSNVDIAV
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHEEECCEEEEE
YNQDTGREAQEVVWRLEAARFITQVHHVHSNTVLREQLAQGKVIAAIAIPSDFSRTVAIE
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEE
GSGRAQVLVDGRRSNSGQIVVGYLSVIAKNIHFTADPTPLPETSVVVRHWFNPNLVYLWF
CCCCEEEEEECCCCCCCCEEEHHHHHHHHCCEECCCCCCCCCCHHHHEECCCCCHHHHHH
MVPCLTGTLAFFSALMITALSIARERELGTFDQLLVSPASTLEIILSKSLPALVISTLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHH
LLMISMAIWFFRIPFTGSFGLLLIGLILFILSAVGIGLVVSAISMTQQQAILGGFVIGVP
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVLISGFATPVENMPAVLQWLAQAIPLTHFLVIIEGSFLKAMPPGDILASLWPLAVIAAV
HHHHHHCCCCCCCHHHHHHHHHHHHCHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
TLTMATVFVRGRLQ
HHHHHHHHHHCCCC
>Mature Secondary Structure 
SYQHFRVILIRLYAQFVKELLCILRDPRNRVVVFVPPLLQLLIFSYAATLEVSNVDIAV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHHHHHHHHHEEECCEEEEE
YNQDTGREAQEVVWRLEAARFITQVHHVHSNTVLREQLAQGKVIAAIAIPSDFSRTVAIE
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEE
GSGRAQVLVDGRRSNSGQIVVGYLSVIAKNIHFTADPTPLPETSVVVRHWFNPNLVYLWF
CCCCEEEEEECCCCCCCCEEEHHHHHHHHCCEECCCCCCCCCCHHHHEECCCCCHHHHHH
MVPCLTGTLAFFSALMITALSIARERELGTFDQLLVSPASTLEIILSKSLPALVISTLLA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHH
LLMISMAIWFFRIPFTGSFGLLLIGLILFILSAVGIGLVVSAISMTQQQAILGGFVIGVP
HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TVLISGFATPVENMPAVLQWLAQAIPLTHFLVIIEGSFLKAMPPGDILASLWPLAVIAAV
HHHHHHCCCCCCCHHHHHHHHHHHHCHHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHH
TLTMATVFVRGRLQ
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]