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The map label for this gene is rbcL [H]

Identifier: 114330814

GI number: 114330814

Start: 822352

End: 823773

Strand: Direct

Name: rbcL [H]

Synonym: Neut_0804

Alternate gene names: 114330814

Gene position: 822352-823773 (Clockwise)

Preceding gene: 114330812

Following gene: 114330815

Centisome position: 30.9

GC content: 58.23

Gene sequence:

>1422_bases
ATGGCAATCAAAACCTATCAGGCCGGTGTCAAGGAGTACCGACAAACTTACTGGCAACCGGATTACGTGCCGCTAGACAC
TGACATTCTAGCGTGTTTTAAAATTACCCCACAGTCTGGCGTCGATCGCGAGGAGGCGGCGGCGGCGGTAGCCGCAGAGT
CGTCCTGCGGTACTTGGACCACAGTGTGGACCGACCTGCTGACCGATCTCGATTACTACAAGGGTCGCGCCTATCGCATC
GAGGATGTTCCCGGTGACGATGCTCGCTTCTATGCTTTCGTCGCGTACCCCATCGACTTGTTCGAAGAGGGTTCTGTGGT
CAACGTGTTCACCTCTCTGGTGGGCAATGTATTCGGTTTCAAGGCGATTCGCGCCTTGCGTCTGGAAGACGTGCGTTTCC
CGATCGCATACGTGAAGACCTGCGGCGGCCCTCCGAGCGGCATCCAGGTGGAGCGTGACAAGATGAACAAGTATGGTCGG
CCGCTGCTGGGCTGCACCATCAAACCTAAGCTGGGCCTGTCGGCCAAGAACTACGGTCGTGCGGTGTATGAGTGTTTGCG
CGGCAGCTTGGACTTCACCAAAGACGACGAGAACATTAATTCTCAGCCGTTCATGCGCTGGCGCGATCGTTTCGAGTTCG
TGCAGGAGGCCACTCTGAAGGCTGAGGCCGAGACCGGCGAGCGTAAGGGTCACTATCTGAACGTCACCGCGCCAACGCCT
GAAGAAATGTACAAGCGCGCAGAATTCGCCAAAGAGATCGGTGCGCCGATCATCATGCACGATTACCTCGCCGGTGGCCT
TTGCGCTAACGCAGGTCTGGCGAACTGGTGCCGTAACAACGGGATGTTGCTGCACGTTCACCGCGCCATGCACGCCGTGC
TCGACCGCAACCCGCATCACGGTATCCACTTCCGCGTGCTAACCAAGATTCTGCGCCTGTCCGGCGGAGATCACTTGCAT
ACCGGTACCGTGGTGGGCAAGCTGGAAGGTGATCGCGCCTCCACTCTTGGTTGGATCGATCTGCTGCGCGAATCCTTCGT
ACCGGAAGACCGTTCGCGCGGTATCTTCTTTGATCAGGATTGGGGTTCGATGCCCGGCGCTTTCGCCGTCGCGTCCGGCG
GTATCCACGTGTGGCACATGCCTGCGCTGGTTGCCATTTTCGGTGACGATTCGGTGTTGCAGTTCGGCGGCGGCACGCTC
GGTCATCCTTGGGGCAACGCTGCAGGTGCACACGCTAACCGCGTTGCGCTCGAAGCCTGCGTACAGGCGCGTAATGAAGG
CCGTCAGATCGAGAAAGAAGGTCGCGAGATCCTTACCGCCGCGGCTCAGCATTCGCCCGAACTGAAGATCGCCATGGAAA
CGTGGAAAGAGATCAAGTTCGAGTTTGACACGGTTGACAAGCTCGACATTGCCCACAAGTAA

Upstream 100 bases:

>100_bases
TCCCTAAGACCAGGATTGATGCCTTGGTCGATTGTGCTGAACAAATTTTCCTTCGTCGTTTAGTTCTCGCGAGCAGCGAG
CTTTAAGGAGTCGTCAAAAC

Downstream 100 bases:

>100_bases
TGTTTCAAACCAAATTCGATCGATCTGCGTTCCAGTGAGACTGCGGCGATCGGATTCGATTCCTAATTTTGAAAGGATAT
AGCTATGGCCATTCAAGCCT

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit 1 [H]

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MAIKTYQAGVKEYRQTYWQPDYVPLDTDILACFKITPQSGVDREEAAAAVAAESSCGTWTTVWTDLLTDLDYYKGRAYRI
EDVPGDDARFYAFVAYPIDLFEEGSVVNVFTSLVGNVFGFKAIRALRLEDVRFPIAYVKTCGGPPSGIQVERDKMNKYGR
PLLGCTIKPKLGLSAKNYGRAVYECLRGSLDFTKDDENINSQPFMRWRDRFEFVQEATLKAEAETGERKGHYLNVTAPTP
EEMYKRAEFAKEIGAPIIMHDYLAGGLCANAGLANWCRNNGMLLHVHRAMHAVLDRNPHHGIHFRVLTKILRLSGGDHLH
TGTVVGKLEGDRASTLGWIDLLRESFVPEDRSRGIFFDQDWGSMPGAFAVASGGIHVWHMPALVAIFGDDSVLQFGGGTL
GHPWGNAAGAHANRVALEACVQARNEGRQIEKEGREILTAAAQHSPELKIAMETWKEIKFEFDTVDKLDIAHK

Sequences:

>Translated_473_residues
MAIKTYQAGVKEYRQTYWQPDYVPLDTDILACFKITPQSGVDREEAAAAVAAESSCGTWTTVWTDLLTDLDYYKGRAYRI
EDVPGDDARFYAFVAYPIDLFEEGSVVNVFTSLVGNVFGFKAIRALRLEDVRFPIAYVKTCGGPPSGIQVERDKMNKYGR
PLLGCTIKPKLGLSAKNYGRAVYECLRGSLDFTKDDENINSQPFMRWRDRFEFVQEATLKAEAETGERKGHYLNVTAPTP
EEMYKRAEFAKEIGAPIIMHDYLAGGLCANAGLANWCRNNGMLLHVHRAMHAVLDRNPHHGIHFRVLTKILRLSGGDHLH
TGTVVGKLEGDRASTLGWIDLLRESFVPEDRSRGIFFDQDWGSMPGAFAVASGGIHVWHMPALVAIFGDDSVLQFGGGTL
GHPWGNAAGAHANRVALEACVQARNEGRQIEKEGREILTAAAQHSPELKIAMETWKEIKFEFDTVDKLDIAHK
>Mature_472_residues
AIKTYQAGVKEYRQTYWQPDYVPLDTDILACFKITPQSGVDREEAAAAVAAESSCGTWTTVWTDLLTDLDYYKGRAYRIE
DVPGDDARFYAFVAYPIDLFEEGSVVNVFTSLVGNVFGFKAIRALRLEDVRFPIAYVKTCGGPPSGIQVERDKMNKYGRP
LLGCTIKPKLGLSAKNYGRAVYECLRGSLDFTKDDENINSQPFMRWRDRFEFVQEATLKAEAETGERKGHYLNVTAPTPE
EMYKRAEFAKEIGAPIIMHDYLAGGLCANAGLANWCRNNGMLLHVHRAMHAVLDRNPHHGIHFRVLTKILRLSGGDHLHT
GTVVGKLEGDRASTLGWIDLLRESFVPEDRSRGIFFDQDWGSMPGAFAVASGGIHVWHMPALVAIFGDDSVLQFGGGTLG
HPWGNAAGAHANRVALEACVQARNEGRQIEKEGREILTAAAQHSPELKIAMETWKEIKFEFDTVDKLDIAHK

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020878
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444 [H]

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N [H]

EC number: =4.1.1.39 [H]

Molecular weight: Translated: 52688; Mature: 52557

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIKTYQAGVKEYRQTYWQPDYVPLDTDILACFKITPQSGVDREEAAAAVAAESSCGTWT
CCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCHH
TVWTDLLTDLDYYKGRAYRIEDVPGDDARFYAFVAYPIDLFEEGSVVNVFTSLVGNVFGF
HHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEEEHHHHCCCCHHHHHHHHHHHHHHH
KAIRALRLEDVRFPIAYVKTCGGPPSGIQVERDKMNKYGRPLLGCTIKPKLGLSAKNYGR
HHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEHHHHHHCCCCEEEEEECCCCCCCHHHHHH
AVYECLRGSLDFTKDDENINSQPFMRWRDRFEFVQEATLKAEAETGERKGHYLNVTAPTP
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH
EEMYKRAEFAKEIGAPIIMHDYLAGGLCANAGLANWCRNNGMLLHVHRAMHAVLDRNPHH
HHHHHHHHHHHHHCCCEEEHHHHHCCHHHCCCHHHHHHCCCEEEEHHHHHHHHHCCCCCC
GIHFRVLTKILRLSGGDHLHTGTVVGKLEGDRASTLGWIDLLRESFVPEDRSRGIFFDQD
CCHHHHHHHHHHHCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEECC
WGSMPGAFAVASGGIHVWHMPALVAIFGDDSVLQFGGGTLGHPWGNAAGAHANRVALEAC
CCCCCCCEEEECCCEEEEECCEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
VQARNEGRQIEKEGREILTAAAQHSPELKIAMETWKEIKFEFDTVDKLDIAHK
HHHHHCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHEEECCCCCCCCCCCC
>Mature Secondary Structure 
AIKTYQAGVKEYRQTYWQPDYVPLDTDILACFKITPQSGVDREEAAAAVAAESSCGTWT
CCCHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCHH
TVWTDLLTDLDYYKGRAYRIEDVPGDDARFYAFVAYPIDLFEEGSVVNVFTSLVGNVFGF
HHHHHHHHHHHHHCCCEEEECCCCCCCCEEEEEEEEEHHHHCCCCHHHHHHHHHHHHHHH
KAIRALRLEDVRFPIAYVKTCGGPPSGIQVERDKMNKYGRPLLGCTIKPKLGLSAKNYGR
HHHHHHHHHHCCCCHHHHHHCCCCCCCCEEEHHHHHHCCCCEEEEEECCCCCCCHHHHHH
AVYECLRGSLDFTKDDENINSQPFMRWRDRFEFVQEATLKAEAETGERKGHYLNVTAPTP
HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCH
EEMYKRAEFAKEIGAPIIMHDYLAGGLCANAGLANWCRNNGMLLHVHRAMHAVLDRNPHH
HHHHHHHHHHHHHCCCEEEHHHHHCCHHHCCCHHHHHHCCCEEEEHHHHHHHHHCCCCCC
GIHFRVLTKILRLSGGDHLHTGTVVGKLEGDRASTLGWIDLLRESFVPEDRSRGIFFDQD
CCHHHHHHHHHHHCCCCEEECCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCEEEECC
WGSMPGAFAVASGGIHVWHMPALVAIFGDDSVLQFGGGTLGHPWGNAAGAHANRVALEAC
CCCCCCCEEEECCCEEEEECCEEEEEECCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
VQARNEGRQIEKEGREILTAAAQHSPELKIAMETWKEIKFEFDTVDKLDIAHK
HHHHHCCCHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHEEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA