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The map label for this gene is ydaL [H]

Identifier: 114330805

GI number: 114330805

Start: 812483

End: 812941

Strand: Direct

Name: ydaL [H]

Synonym: Neut_0793

Alternate gene names: 114330805

Gene position: 812483-812941 (Clockwise)

Preceding gene: 114330804

Following gene: 114330806

Centisome position: 30.53

GC content: 49.24

Gene sequence:

>459_bases
ATGCTTTCTCAATCAAAACGCCGGCTGTTTATTCAACCTCATGTACCAATCCTGCCTTGTGTTGACCATGACTTGCCCGG
CGGTCATCAGCAAGAGATAGGAGAGGGTGATGAATGGTCGTTTGCCCGTCCTGGTCTGCAGCGATATACCTTGCGCAAGC
TACGGCGTGGATATTGGTCTATTCAGGATGAACTTGATCTGCATGGATTAAATCGGGATGAGGCGTATCGGGTATTGATG
ACATTTCTGGAGGCTGTTATTTTGCAGGGATATCGCTGTGTACGTGTTATTCATGGCAGAGGACTCAGTTCAAAGAACCG
CAGACCGGTACTAAAAATTCTGACAGGCAACTGGCTGATGCGCCATGATGATGTGCTCGCTTTTTGCCAGGCGCTGCCTG
AACATGGGGGAAGTGGCGCTGTACTGGTTCTTTTGAGAAATGCGGATAAGTCACCCTGA

Upstream 100 bases:

>100_bases
TAACCCGTCATCCAGTCAGGAGACTATCCATGATGCTGCTGCCTTGTTCCGCGAGGCTATGCAGGGAGTTAAACCGCTTG
CCAAGACTGGGAGGAAAGTG

Downstream 100 bases:

>100_bases
AAATTGCAGTTGATCGTTTATCTGTTTCTGGAAGCCTGGAAATAACTCTGCCGCTTCGTCGCCCTTTGCCCGACATGCAT
CCAACATACAGAAATTTTTT

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 152

Protein sequence:

>152_residues
MLSQSKRRLFIQPHVPILPCVDHDLPGGHQQEIGEGDEWSFARPGLQRYTLRKLRRGYWSIQDELDLHGLNRDEAYRVLM
TFLEAVILQGYRCVRVIHGRGLSSKNRRPVLKILTGNWLMRHDDVLAFCQALPEHGGSGAVLVLLRNADKSP

Sequences:

>Translated_152_residues
MLSQSKRRLFIQPHVPILPCVDHDLPGGHQQEIGEGDEWSFARPGLQRYTLRKLRRGYWSIQDELDLHGLNRDEAYRVLM
TFLEAVILQGYRCVRVIHGRGLSSKNRRPVLKILTGNWLMRHDDVLAFCQALPEHGGSGAVLVLLRNADKSP
>Mature_152_residues
MLSQSKRRLFIQPHVPILPCVDHDLPGGHQQEIGEGDEWSFARPGLQRYTLRKLRRGYWSIQDELDLHGLNRDEAYRVLM
TFLEAVILQGYRCVRVIHGRGLSSKNRRPVLKILTGNWLMRHDDVLAFCQALPEHGGSGAVLVLLRNADKSP

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=112, Percent_Identity=37.5, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI1788671, Length=106, Percent_Identity=37.7358490566038, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 17388; Mature: 17388

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSQSKRRLFIQPHVPILPCVDHDLPGGHQQEIGEGDEWSFARPGLQRYTLRKLRRGYWS
CCCCCCCEEEECCCCCEECCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
IQDELDLHGLNRDEAYRVLMTFLEAVILQGYRCVRVIHGRGLSSKNRRPVLKILTGNWLM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHEEHHHCCCCCCCCCCCEEEEECCCEEE
RHDDVLAFCQALPEHGGSGAVLVLLRNADKSP
CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
>Mature Secondary Structure
MLSQSKRRLFIQPHVPILPCVDHDLPGGHQQEIGEGDEWSFARPGLQRYTLRKLRRGYWS
CCCCCCCEEEECCCCCEECCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCC
IQDELDLHGLNRDEAYRVLMTFLEAVILQGYRCVRVIHGRGLSSKNRRPVLKILTGNWLM
CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHEEHHHCCCCCCCCCCCEEEEECCCEEE
RHDDVLAFCQALPEHGGSGAVLVLLRNADKSP
CHHHHHHHHHHHHCCCCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]