Click here to switch to the map view.

The map label for this gene is rnfB [H]

Identifier: 114330660

GI number: 114330660

Start: 656105

End: 656761

Strand: Reverse

Name: rnfB [H]

Synonym: Neut_0645

Alternate gene names: 114330660

Gene position: 656761-656105 (Counterclockwise)

Preceding gene: 114330661

Following gene: 114330659

Centisome position: 24.68

GC content: 54.95

Gene sequence:

>657_bases
ATGCTGGATAAAAGTAAATTGATTGAGCAGATTGATGCCGTGCTGCCGCAAACCCAATGCGGCCAGTGCAGATTTGATGG
TTGCCGTCCTTATGCTGTAGCGATTGCTGAGGGGTGCGCCGATATTAATCAATGTCCGCCTGGTGGCGACGCCGGCGCCG
CAGCTATTGCCGCCATCCTTAACATCGCTCCCAAGCCACTCAATACGGCTTATGGCCACCCCAAACCACCAGCAGTCGCC
GTCATTGATGAAGCACAGTGTATCGGCTGTACCTTCTGCCTGCGCGCCTGTCCGGTAGACGCCATCATCGGCGCGGCCAA
ATGCATGCATACCGTCCTGACCGCGTTATGTACCGGCTGTGAACGTTGTATCGCACCCTGCCCGGTGGACTGCATCAGCA
TGGTGCCCGTGTCTGAGCCCGCCACACCTGAAATTCGGCAACAAATAGCTGACAGCGCGCGTGAGCGGTATCATCTCAGA
CAACTCAGACTGGCACGCAACCGACAGGAATCCCGGAAACCAAAACAGAACAGACTTGGAGCAAATACTATCTCCGCTAC
ACAACCAGCAACCGATATGAAAAAAGCAGCCATCCAAGCAGCGATGGAACGCGCACGCACAGCACTTGCGCGTTCCAACA
TTCCGTTTAAAGAATGA

Upstream 100 bases:

>100_bases
AAAGCCGGCGCCAGCCTGGTGCAGGTTTATTCCGGATTAATTTACCGTGGCCCGGCTCTGGTTTCGGAAATCACCTCACT
ACTTTGCTCTCGTTCAACCT

Downstream 100 bases:

>100_bases
ATACCACCAAACGCCGGGAGATATTCACCCGATTCAGGCAGGCCAACCCCCATCCGACCACGGAACTCGAATACAGCACA
CCGTTTCAGTTACTGGTTGC

Product: electron transport complex, RnfABCDGE type, B subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MLDKSKLIEQIDAVLPQTQCGQCRFDGCRPYAVAIAEGCADINQCPPGGDAGAAAIAAILNIAPKPLNTAYGHPKPPAVA
VIDEAQCIGCTFCLRACPVDAIIGAAKCMHTVLTALCTGCERCIAPCPVDCISMVPVSEPATPEIRQQIADSARERYHLR
QLRLARNRQESRKPKQNRLGANTISATQPATDMKKAAIQAAMERARTALARSNIPFKE

Sequences:

>Translated_218_residues
MLDKSKLIEQIDAVLPQTQCGQCRFDGCRPYAVAIAEGCADINQCPPGGDAGAAAIAAILNIAPKPLNTAYGHPKPPAVA
VIDEAQCIGCTFCLRACPVDAIIGAAKCMHTVLTALCTGCERCIAPCPVDCISMVPVSEPATPEIRQQIADSARERYHLR
QLRLARNRQESRKPKQNRLGANTISATQPATDMKKAAIQAAMERARTALARSNIPFKE
>Mature_218_residues
MLDKSKLIEQIDAVLPQTQCGQCRFDGCRPYAVAIAEGCADINQCPPGGDAGAAAIAAILNIAPKPLNTAYGHPKPPAVA
VIDEAQCIGCTFCLRACPVDAIIGAAKCMHTVLTALCTGCERCIAPCPVDCISMVPVSEPATPEIRQQIADSARERYHLR
QLRLARNRQESRKPKQNRLGANTISATQPATDMKKAAIQAAMERARTALARSNIPFKE

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=139, Percent_Identity=53.2374100719424, Blast_Score=152, Evalue=2e-38,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 23307; Mature: 23307

Theoretical pI: Translated: 8.28; Mature: 8.28

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

6.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
9.2 %Cys+Met (Translated Protein)
6.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
9.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDKSKLIEQIDAVLPQTQCGQCRFDGCRPYAVAIAEGCADINQCPPGGDAGAAAIAAIL
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
NIAPKPLNTAYGHPKPPAVAVIDEAQCIGCTFCLRACPVDAIIGAAKCMHTVLTALCTGC
HCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ERCIAPCPVDCISMVPVSEPATPEIRQQIADSARERYHLRQLRLARNRQESRKPKQNRLG
HHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
ANTISATQPATDMKKAAIQAAMERARTALARSNIPFKE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLDKSKLIEQIDAVLPQTQCGQCRFDGCRPYAVAIAEGCADINQCPPGGDAGAAAIAAIL
CCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
NIAPKPLNTAYGHPKPPAVAVIDEAQCIGCTFCLRACPVDAIIGAAKCMHTVLTALCTGC
HCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
ERCIAPCPVDCISMVPVSEPATPEIRQQIADSARERYHLRQLRLARNRQESRKPKQNRLG
HHHCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC
ANTISATQPATDMKKAAIQAAMERARTALARSNIPFKE
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA