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The map label for this gene is rimM

Identifier: 114330464

GI number: 114330464

Start: 455765

End: 456271

Strand: Reverse

Name: rimM

Synonym: Neut_0444

Alternate gene names: 114330464

Gene position: 456271-455765 (Counterclockwise)

Preceding gene: 114330465

Following gene: 114330463

Centisome position: 17.15

GC content: 46.15

Gene sequence:

>507_bases
ATGGTTGTGTTGGGTAGAGTTATTGGCCCACACGGGATTAGAGGCCAGATCAAGGTTACTCCCTTCACCGAACACATTGA
TGGATTGATGGAATATCCTGTGTGGTGGCTCAGCAATGATGAGAAAAGCTGGCAAATAGTACATCCAACCTCTTTCTCTG
TTCACGACAGCTTGCTGATTATTACGTTGGAAGAATATAGCGACCGGACGAATGCCTCTGGGCTGAAGGGGTGGCTGATT
GCCGTACCACGCAGTCAACTGCCTCAACTATCAGAAGATGGCAAAGAGGGATACTATTGGTCAGATTTGATTGGAATCAG
TGTTGTTAACACGCAAGGTGAATTTATCGGAACTGTGGCCGGCTTATTTGAAACAGGGGCAAATGACGTATTGCGCATTC
AGCTCCCCGGCGGCAAAGAAGAATTGATTCCTTTTGTAGATCAGGTTGTCAGGCAAGTAGATATGAGATCACGACAAATC
ATGGTGGATTGGGAGCTAGATTATTGA

Upstream 100 bases:

>100_bases
CTATCCAGTACCGTCTCCAGGCTCGTTAAACAGTTTGGCAGACAGCAAAAACCCGCCTAGCCATCAGAGTGAAGCCGGGC
TTCTCATAAACGAGGAGTTA

Downstream 100 bases:

>100_bases
ATTTTGTATGATGCCGTTTGAATTTGACGTCATTACGTTGTTGCCCGACATGTTTGATGCTGTCACACAACACGGAGTAA
CAGGCAGAGCAAAAAAAAAT

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 168

Protein sequence:

>168_residues
MVVLGRVIGPHGIRGQIKVTPFTEHIDGLMEYPVWWLSNDEKSWQIVHPTSFSVHDSLLIITLEEYSDRTNASGLKGWLI
AVPRSQLPQLSEDGKEGYYWSDLIGISVVNTQGEFIGTVAGLFETGANDVLRIQLPGGKEELIPFVDQVVRQVDMRSRQI
MVDWELDY

Sequences:

>Translated_168_residues
MVVLGRVIGPHGIRGQIKVTPFTEHIDGLMEYPVWWLSNDEKSWQIVHPTSFSVHDSLLIITLEEYSDRTNASGLKGWLI
AVPRSQLPQLSEDGKEGYYWSDLIGISVVNTQGEFIGTVAGLFETGANDVLRIQLPGGKEELIPFVDQVVRQVDMRSRQI
MVDWELDY
>Mature_168_residues
MVVLGRVIGPHGIRGQIKVTPFTEHIDGLMEYPVWWLSNDEKSWQIVHPTSFSVHDSLLIITLEEYSDRTNASGLKGWLI
AVPRSQLPQLSEDGKEGYYWSDLIGISVVNTQGEFIGTVAGLFETGANDVLRIQLPGGKEELIPFVDQVVRQVDMRSRQI
MVDWELDY

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=170, Percent_Identity=40.5882352941176, Blast_Score=114, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_NITEC (Q0AIV0)

Other databases:

- EMBL:   CP000450
- RefSeq:   YP_746686.1
- ProteinModelPortal:   Q0AIV0
- SMR:   Q0AIV0
- STRING:   Q0AIV0
- GeneID:   4271908
- GenomeReviews:   CP000450_GR
- KEGG:   net:Neut_0444
- NMPDR:   fig|335283.3.peg.1151
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   AYGIRGW
- PhylomeDB:   Q0AIV0
- ProtClustDB:   PRK00122
- BioCyc:   NEUT335283:NEUT_0444-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 18984; Mature: 18984

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVLGRVIGPHGIRGQIKVTPFTEHIDGLMEYPVWWLSNDEKSWQIVHPTSFSVHDSLLI
CEEEECCCCCCCCCCEEEECCHHHHHHHHHHCCEEEEECCCCCEEEECCCCCCCCCEEEE
ITLEEYSDRTNASGLKGWLIAVPRSQLPQLSEDGKEGYYWSDLIGISVVNTQGEFIGTVA
EEEECCCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHH
GLFETGANDVLRIQLPGGKEELIPFVDQVVRQVDMRSRQIMVDWELDY
HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECC
>Mature Secondary Structure
MVVLGRVIGPHGIRGQIKVTPFTEHIDGLMEYPVWWLSNDEKSWQIVHPTSFSVHDSLLI
CEEEECCCCCCCCCCEEEECCHHHHHHHHHHCCEEEEECCCCCEEEECCCCCCCCCEEEE
ITLEEYSDRTNASGLKGWLIAVPRSQLPQLSEDGKEGYYWSDLIGISVVNTQGEFIGTVA
EEEECCCCCCCCCCCCEEEEECCHHHCCCCCCCCCCCCEEEEEEEEEEECCCCCHHHHHH
GLFETGANDVLRIQLPGGKEELIPFVDQVVRQVDMRSRQIMVDWELDY
HHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA