Click here to switch to the map view.

The map label for this gene is ybeQ [H]

Identifier: 114330400

GI number: 114330400

Start: 380776

End: 381474

Strand: Reverse

Name: ybeQ [H]

Synonym: Neut_0379

Alternate gene names: 114330400

Gene position: 381474-380776 (Counterclockwise)

Preceding gene: 114330401

Following gene: 114330397

Centisome position: 14.34

GC content: 47.93

Gene sequence:

>699_bases
ATGAAAACTATCGCAGTTCTTTTGGCAGCACTCTTGTTGGCCGCCGGCTGTGGGAACAAGAGCTCCACCGAAAAAACAGC
AACCAATGAAGCAGAAGTTACATTAATGGGTGAATCCACCACCGCCGGCGAACTTCCATCATTCCTGAAAGAAGGTTTGT
CAGAAAAAGAGCAAGATGAACTGAAGAAAAAAATCATGCCAACACTGGATGACGGACTGACTCCTGAGCAGCGCTTTCTG
AATCTGCGTAAGAAAGCAGAAGCTGGTGATGCAGAAGCACAAAATGGCCTGGGTTCCATGTATTTTTCAGGAGAAGCCGT
TTCACACGACGCCCAGGGAAACCCCTTGAGTAAAGATCCAGAAGCTGCGGCAGGGTGGTTCTACCGGGCAGCAGAGCAAG
GTCATGCTGACGCACAATTTAACCTCGGGTTGCTGTATTTCACTGGCGAAGGCGTTCCTCAGGACAAAACCAAGGCCGTA
GAGCTATTCACTAAAGCTGCCGAACAAGGAAATATTGACGCACAAAATAATCTGGGCGTTATTTACCTGTTGGGGGAAGG
CGTCGAGCAAAACACCAATAAAGCAGTCGAATGGTTTGAAAAAGCTGCCGAACAAGGAAATGAAGAAGCCATCAAAAATC
TGGAAGCGGTCCGCGCTTCACAGAAAGCTTCCCAAAAACCCAGTGGCGAACAAAAATAA

Upstream 100 bases:

>100_bases
TTTATTACCAATCAACGAAATACATGAAACCAGCCAATGCAACAACACCGGAGCTATCCGGTTGATCTTTATCCAATAAA
TCAGAAAAAAGGAAAACAGC

Downstream 100 bases:

>100_bases
TCGAGTCAAATAAAATCCGGCCAGCATCTACCTGGCCGGACAGTATCTTGAGTGAAGTGGCGTATAGCAAATATTACAGC
CGCACATTAAAACGCCCCAG

Product: Sel1 domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKTIAVLLAALLLAAGCGNKSSTEKTATNEAEVTLMGESTTAGELPSFLKEGLSEKEQDELKKKIMPTLDDGLTPEQRFL
NLRKKAEAGDAEAQNGLGSMYFSGEAVSHDAQGNPLSKDPEAAAGWFYRAAEQGHADAQFNLGLLYFTGEGVPQDKTKAV
ELFTKAAEQGNIDAQNNLGVIYLLGEGVEQNTNKAVEWFEKAAEQGNEEAIKNLEAVRASQKASQKPSGEQK

Sequences:

>Translated_232_residues
MKTIAVLLAALLLAAGCGNKSSTEKTATNEAEVTLMGESTTAGELPSFLKEGLSEKEQDELKKKIMPTLDDGLTPEQRFL
NLRKKAEAGDAEAQNGLGSMYFSGEAVSHDAQGNPLSKDPEAAAGWFYRAAEQGHADAQFNLGLLYFTGEGVPQDKTKAV
ELFTKAAEQGNIDAQNNLGVIYLLGEGVEQNTNKAVEWFEKAAEQGNEEAIKNLEAVRASQKASQKPSGEQK
>Mature_232_residues
MKTIAVLLAALLLAAGCGNKSSTEKTATNEAEVTLMGESTTAGELPSFLKEGLSEKEQDELKKKIMPTLDDGLTPEQRFL
NLRKKAEAGDAEAQNGLGSMYFSGEAVSHDAQGNPLSKDPEAAAGWFYRAAEQGHADAQFNLGLLYFTGEGVPQDKTKAV
ELFTKAAEQGNIDAQNNLGVIYLLGEGVEQNTNKAVEWFEKAAEQGNEEAIKNLEAVRASQKASQKPSGEQK

Specific function: Unknown

COG id: COG0790

COG function: function code R; FOG: TPR repeat, SEL1 subfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybeT [H]

Homologues:

Organism=Homo sapiens, GI19923669, Length=141, Percent_Identity=36.1702127659575, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI151301150, Length=137, Percent_Identity=36.4963503649635, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI154689719, Length=159, Percent_Identity=33.9622641509434, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI87081769, Length=149, Percent_Identity=41.6107382550336, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1786867, Length=121, Percent_Identity=37.1900826446281, Blast_Score=71, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17563256, Length=125, Percent_Identity=35.2, Blast_Score=67, Evalue=7e-12,
Organism=Drosophila melanogaster, GI21355295, Length=138, Percent_Identity=36.9565217391304, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006597
- InterPro:   IPR011990 [H]

Pfam domain/function: PF08238 Sel1 [H]

EC number: NA

Molecular weight: Translated: 24853; Mature: 24853

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTIAVLLAALLLAAGCGNKSSTEKTATNEAEVTLMGESTTAGELPSFLKEGLSEKEQDE
CHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHH
LKKKIMPTLDDGLTPEQRFLNLRKKAEAGDAEAQNGLGSMYFSGEAVSHDAQGNPLSKDP
HHHHHCCHHCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCC
EAAAGWFYRAAEQGHADAQFNLGLLYFTGEGVPQDKTKAVELFTKAAEQGNIDAQNNLGV
CHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
IYLLGEGVEQNTNKAVEWFEKAAEQGNEEAIKNLEAVRASQKASQKPSGEQK
EEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKTIAVLLAALLLAAGCGNKSSTEKTATNEAEVTLMGESTTAGELPSFLKEGLSEKEQDE
CHHHHHHHHHHHHHHCCCCCCCCCHHCCCCCEEEEEECCCCHHHHHHHHHHHCCHHHHHH
LKKKIMPTLDDGLTPEQRFLNLRKKAEAGDAEAQNGLGSMYFSGEAVSHDAQGNPLSKDP
HHHHHCCHHCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCEEECCCCCCCCCCCCCCCCCC
EAAAGWFYRAAEQGHADAQFNLGLLYFTGEGVPQDKTKAVELFTKAAEQGNIDAQNNLGV
CHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEE
IYLLGEGVEQNTNKAVEWFEKAAEQGNEEAIKNLEAVRASQKASQKPSGEQK
EEEECCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]