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The map label for this gene is flgD [H]

Identifier: 114330360

GI number: 114330360

Start: 342756

End: 343427

Strand: Direct

Name: flgD [H]

Synonym: Neut_0337

Alternate gene names: 114330360

Gene position: 342756-343427 (Clockwise)

Preceding gene: 114330359

Following gene: 114330361

Centisome position: 12.88

GC content: 53.87

Gene sequence:

>672_bases
ATGAGTCAGGTGCAAAACAATTCCAGCGTATCCGAACTGCTGACTTCCAATGGGGGCAGTATCAAGACTGCCCGCAAGGG
TGATGAGGATATGCAGGAGCGGTTTCTCAAACTGCTGGTGACACAAATGCAAAATCAGGATCCGCTCAGCCCGATGGATA
ACGCAGAAGTAACCAGCCAGATGGCGCAGATCAGTACCGTAAGCGGCATCGACAAGCTCAATAGCACGCTGGAAAAGCTG
GTATCGGATTCCGATGCACGGCGTTCATTTGAAGCCGCCAACATGATTGGCCGTAGCGTGTTGGTTCCAGGCGCTGACAT
GCAACTGGAAAACCACACCGGAATCGGCGGATTTGAACTGACCGAACCGGTAGACAAGCTGGTCGTCACCATCAAGGATA
GCGCCGGTATTGCCGTGCGTGACATTGATCTAGGCACGCAACCGGCAGGGGTGGGCACATTTGCCTGGGATGGCCTGGCA
AACAATGGTAACGAAGCTGCCGGGGGGCAATACAGTTTCGCCCTGAAAGCCGTGCGCAGTAACCAGGAGGTAGCTGCTTC
CACTCTGGCATTTGGTTCGGTCAGCAGCGCACAGGCTGGCAAGGAGGGCGCCTTGCTGGAAGTAGGTAGGCTGGGTTACG
TCGGTATGCATGATATTAAAAAAATATTTTGA

Upstream 100 bases:

>100_bases
GTCGGCATCGCGTTCCTATCAGAACAGCGTTGACATGATGAACGTGACCAAAACATTGCTGCAAAAAACACTATCAATTG
GCCAATAAGGAGAGATAGAT

Downstream 100 bases:

>100_bases
TCAGGGGAGTAAATCATGGGTTTTCAGCATGGATTAAGTGGTCTAAAAGCAGCCTCGGCCAAACTGGACGTTACCGGTAA
TAATATTGCTAACGCTAATA

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 223; Mature: 222

Protein sequence:

>223_residues
MSQVQNNSSVSELLTSNGGSIKTARKGDEDMQERFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSGIDKLNSTLEKL
VSDSDARRSFEAANMIGRSVLVPGADMQLENHTGIGGFELTEPVDKLVVTIKDSAGIAVRDIDLGTQPAGVGTFAWDGLA
NNGNEAAGGQYSFALKAVRSNQEVAASTLAFGSVSSAQAGKEGALLEVGRLGYVGMHDIKKIF

Sequences:

>Translated_223_residues
MSQVQNNSSVSELLTSNGGSIKTARKGDEDMQERFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSGIDKLNSTLEKL
VSDSDARRSFEAANMIGRSVLVPGADMQLENHTGIGGFELTEPVDKLVVTIKDSAGIAVRDIDLGTQPAGVGTFAWDGLA
NNGNEAAGGQYSFALKAVRSNQEVAASTLAFGSVSSAQAGKEGALLEVGRLGYVGMHDIKKIF
>Mature_222_residues
SQVQNNSSVSELLTSNGGSIKTARKGDEDMQERFLKLLVTQMQNQDPLSPMDNAEVTSQMAQISTVSGIDKLNSTLEKLV
SDSDARRSFEAANMIGRSVLVPGADMQLENHTGIGGFELTEPVDKLVVTIKDSAGIAVRDIDLGTQPAGVGTFAWDGLAN
NGNEAAGGQYSFALKAVRSNQEVAASTLAFGSVSSAQAGKEGALLEVGRLGYVGMHDIKKIF

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=202, Percent_Identity=39.6039603960396, Blast_Score=149, Evalue=1e-37,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 23539; Mature: 23407

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVQNNSSVSELLTSNGGSIKTARKGDEDMQERFLKLLVTQMQNQDPLSPMDNAEVTSQ
CCCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
MAQISTVSGIDKLNSTLEKLVSDSDARRSFEAANMIGRSVLVPGADMQLENHTGIGGFEL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEECCCCCCEECCCCCCCCCCH
TEPVDKLVVTIKDSAGIAVRDIDLGTQPAGVGTFAWDGLANNGNEAAGGQYSFALKAVRS
HHHHHHEEEEEECCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHC
NQEVAASTLAFGSVSSAQAGKEGALLEVGRLGYVGMHDIKKIF
CHHHHHHHHHHCCCCHHCCCCCCCEEEECCCCCCCHHHHHHHC
>Mature Secondary Structure 
SQVQNNSSVSELLTSNGGSIKTARKGDEDMQERFLKLLVTQMQNQDPLSPMDNAEVTSQ
CCCCCCHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
MAQISTVSGIDKLNSTLEKLVSDSDARRSFEAANMIGRSVLVPGADMQLENHTGIGGFEL
HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCEEECCCCCCEECCCCCCCCCCH
TEPVDKLVVTIKDSAGIAVRDIDLGTQPAGVGTFAWDGLANNGNEAAGGQYSFALKAVRS
HHHHHHEEEEEECCCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHC
NQEVAASTLAFGSVSSAQAGKEGALLEVGRLGYVGMHDIKKIF
CHHHHHHHHHHCCCCHHCCCCCCCEEEECCCCCCCHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]