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The map label for this gene is ygcF [C]

Identifier: 114330319

GI number: 114330319

Start: 300987

End: 301622

Strand: Direct

Name: ygcF [C]

Synonym: Neut_0292

Alternate gene names: 114330319

Gene position: 300987-301622 (Clockwise)

Preceding gene: 114330318

Following gene: 114330320

Centisome position: 11.31

GC content: 47.64

Gene sequence:

>636_bases
ATGTTACGAGTTACGGAAATTTTCTATTCGCTTCAGGGGGAAACAAGCCGGATGGGATTGCCCACGGTATTTATCCGCCT
GACCGGCTGCCCGTTACGTTGTGGATATTGCGATACCAGCTACGCATTTTCTGGTGGCGAAAGTATGGATATCAGTGAAA
TCATGCGCAAAGTGGCTTCGTTTTCTCCGCATTATGTCACTGTTACGGGAGGGGAGCCGTTAGCTCAAGCCGACAGCCTG
ACTCTGCTGACAGCTTTGTGTGATCGAGGATATTCCGTTTCTCTTGAAACCAGCGGAGCACTGGATATTTCACGAGTAGA
TACGCGTGTATCGAGAATTCTGGATATCAAAACACCAGGTTCTGGTGAGATGGAAAAAAATTACTGGAATAACCTCGACT
GCCTGACTGCTCATGATGAAATAAAATTTGTATTGTGTGATCGGACTGATTATAACTGGGCGATGCAAAAACTCCTGACG
CTGGAGTTAGCTAACATCTGCCCGGTTTTGTTCTCCCCGGTTTATAACCAGCTTGATCCCGCAGCGCTGGCGGCTTGGAT
ATTACAAGATAGATTGCCGGTTCGTTTGCAATTCCAGCTACATAAGTTGCTCTGGGGGGAGTGTGTCGGGCGATAA

Upstream 100 bases:

>100_bases
CTTGACTGTCTATGTTGCTAAAATTTAGCACAACTTGTTCTACTCATTTTTAAATTCCTTTTGGCAAGCAGAGGGAATGT
TCCAGTCCCGTTAGGATCCG

Downstream 100 bases:

>100_bases
AACAGTAGACGGGTTTGATTCATGAAAAAAGCAGTTGTGCTGTTATCAGGAGGGCTGGATTCCACTACAACACTTGCTAT
TGCCAGGGGAAATGGGTTTG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 211

Protein sequence:

>211_residues
MLRVTEIFYSLQGETSRMGLPTVFIRLTGCPLRCGYCDTSYAFSGGESMDISEIMRKVASFSPHYVTVTGGEPLAQADSL
TLLTALCDRGYSVSLETSGALDISRVDTRVSRILDIKTPGSGEMEKNYWNNLDCLTAHDEIKFVLCDRTDYNWAMQKLLT
LELANICPVLFSPVYNQLDPAALAAWILQDRLPVRLQFQLHKLLWGECVGR

Sequences:

>Translated_211_residues
MLRVTEIFYSLQGETSRMGLPTVFIRLTGCPLRCGYCDTSYAFSGGESMDISEIMRKVASFSPHYVTVTGGEPLAQADSL
TLLTALCDRGYSVSLETSGALDISRVDTRVSRILDIKTPGSGEMEKNYWNNLDCLTAHDEIKFVLCDRTDYNWAMQKLLT
LELANICPVLFSPVYNQLDPAALAAWILQDRLPVRLQFQLHKLLWGECVGR
>Mature_211_residues
MLRVTEIFYSLQGETSRMGLPTVFIRLTGCPLRCGYCDTSYAFSGGESMDISEIMRKVASFSPHYVTVTGGEPLAQADSL
TLLTALCDRGYSVSLETSGALDISRVDTRVSRILDIKTPGSGEMEKNYWNNLDCLTAHDEIKFVLCDRTDYNWAMQKLLT
LELANICPVLFSPVYNQLDPAALAAWILQDRLPVRLQFQLHKLLWGECVGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=122, Percent_Identity=31.9672131147541, Blast_Score=67, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 23628; Mature: 23628

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRVTEIFYSLQGETSRMGLPTVFIRLTGCPLRCGYCDTSYAFSGGESMDISEIMRKVAS
CCCHHEEHHHHCCCCCCCCCCEEEEEEECCCEECCCCCCCCEECCCCCCCHHHHHHHHHC
FSPHYVTVTGGEPLAQADSLTLLTALCDRGYSVSLETSGALDISRVDTRVSRILDIKTPG
CCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHHEEECCCC
SGEMEKNYWNNLDCLTAHDEIKFVLCDRTDYNWAMQKLLTLELANICPVLFSPVYNQLDP
CCCCCHHHCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AALAAWILQDRLPVRLQFQLHKLLWGECVGR
HHHHHHHHHCCCCEEEHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLRVTEIFYSLQGETSRMGLPTVFIRLTGCPLRCGYCDTSYAFSGGESMDISEIMRKVAS
CCCHHEEHHHHCCCCCCCCCCEEEEEEECCCEECCCCCCCCEECCCCCCCHHHHHHHHHC
FSPHYVTVTGGEPLAQADSLTLLTALCDRGYSVSLETSGALDISRVDTRVSRILDIKTPG
CCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCEEHHHHHHHHHHHEEECCCC
SGEMEKNYWNNLDCLTAHDEIKFVLCDRTDYNWAMQKLLTLELANICPVLFSPVYNQLDP
CCCCCHHHCCCCCEEEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
AALAAWILQDRLPVRLQFQLHKLLWGECVGR
HHHHHHHHHCCCCEEEHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]