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The map label for this gene is pal [H]

Identifier: 114330317

GI number: 114330317

Start: 299543

End: 300064

Strand: Direct

Name: pal [H]

Synonym: Neut_0290

Alternate gene names: 114330317

Gene position: 299543-300064 (Clockwise)

Preceding gene: 114330316

Following gene: 114330318

Centisome position: 11.26

GC content: 48.85

Gene sequence:

>522_bases
ATGAAAAAATTTTTAGCAGTGCTGGCGATTAGCCTGCTGTCAGCTTGCGCTAGCGATAATGCACAACAAACTTCTGATAT
TGAGGATCATTCGTATAGCAGGGGAGGAGAAAGTGAGGGTATGCGAAGCGGTACCGGATCAGATAGATTTGGGATGAATC
CTTTACAGGACCCGAACAACATATTATCCCGGCGCAGTGTTTACTTTGATTTTGACAGCTATACAGTAAAGGGCGAGTAC
CGCGACCTGGTTCTTGCGCACGCTGCCTATTTGCGTGACAACCTGAACGCACAGGTGTTACTGCAAGGCAATACTGATGA
ACGTGGCAGTCGGGAATATAACCTTGCACTTGGGCAACGCCGGGCCAACAGTGTGAAGGATATCCTACTGCTATCCGGTG
CCCGTGATCAACAGGTTGAAGCTGTCAGCCTGGGTGAAGAAAAACCGCGTGCTCTGGGGAGTGATGAGTCATCCTGGGCT
GAGAACCGACGTACTGATATTCTCTATCAAGGAGAGTATTAA

Upstream 100 bases:

>100_bases
GGGAAGCGGTTTGGGGGCCGTTGCTGAAACAGCGGTAATGTGGATAAGAAACGCTCACTGGATGTGGGTTATTTATTTAT
TTATTTATTTATGGTGAGAA

Downstream 100 bases:

>100_bases
TGTTTTTGCGCGCTTTCTTGCCGTTACTTTTGCTTCTTGGTTGTAGCGTTGCACAGGCTGCACTGTTTGGTGATTCTGAA
ACCCGTGAACAGTTGGATGC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: OMP P6; P6-like; Peptidoglycan-associated lipoprotein [H]

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MKKFLAVLAISLLSACASDNAQQTSDIEDHSYSRGGESEGMRSGTGSDRFGMNPLQDPNNILSRRSVYFDFDSYTVKGEY
RDLVLAHAAYLRDNLNAQVLLQGNTDERGSREYNLALGQRRANSVKDILLLSGARDQQVEAVSLGEEKPRALGSDESSWA
ENRRTDILYQGEY

Sequences:

>Translated_173_residues
MKKFLAVLAISLLSACASDNAQQTSDIEDHSYSRGGESEGMRSGTGSDRFGMNPLQDPNNILSRRSVYFDFDSYTVKGEY
RDLVLAHAAYLRDNLNAQVLLQGNTDERGSREYNLALGQRRANSVKDILLLSGARDQQVEAVSLGEEKPRALGSDESSWA
ENRRTDILYQGEY
>Mature_173_residues
MKKFLAVLAISLLSACASDNAQQTSDIEDHSYSRGGESEGMRSGTGSDRFGMNPLQDPNNILSRRSVYFDFDSYTVKGEY
RDLVLAHAAYLRDNLNAQVLLQGNTDERGSREYNLALGQRRANSVKDILLLSGARDQQVEAVSLGEEKPRALGSDESSWA
ENRRTDILYQGEY

Specific function: Thought to play a role in bacterial envelope integrity. Links the outer membrane to the peptidoglycan layer [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=183, Percent_Identity=36.0655737704918, Blast_Score=107, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19246; Mature: 19246

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFLAVLAISLLSACASDNAQQTSDIEDHSYSRGGESEGMRSGTGSDRFGMNPLQDPNN
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ILSRRSVYFDFDSYTVKGEYRDLVLAHAAYLRDNLNAQVLLQGNTDERGSREYNLALGQR
HHHHCEEEEECCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEHHHHHH
RANSVKDILLLSGARDQQVEAVSLGEEKPRALGSDESSWAENRRTDILYQGEY
HHHHHHHEEEECCCCCCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEECCC
>Mature Secondary Structure
MKKFLAVLAISLLSACASDNAQQTSDIEDHSYSRGGESEGMRSGTGSDRFGMNPLQDPNN
CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
ILSRRSVYFDFDSYTVKGEYRDLVLAHAAYLRDNLNAQVLLQGNTDERGSREYNLALGQR
HHHHCEEEEECCCEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEEHHHHHH
RANSVKDILLLSGARDQQVEAVSLGEEKPRALGSDESSWAENRRTDILYQGEY
HHHHHHHEEEECCCCCCCCHHHHCCCCCCCCCCCCCHHHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7868272; 11248100 [H]