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The map label for this gene is exbD [H]

Identifier: 114330314

GI number: 114330314

Start: 296837

End: 297253

Strand: Direct

Name: exbD [H]

Synonym: Neut_0287

Alternate gene names: 114330314

Gene position: 296837-297253 (Clockwise)

Preceding gene: 114330313

Following gene: 114330315

Centisome position: 11.15

GC content: 44.12

Gene sequence:

>417_bases
ATGATTCCGCGTCGCAGTAAACGCCGATTAATGAATGAAATAAATGTTGTGCCATATATTGACGTTATGCTGGTGCTGCT
TATAATTTTCATGATCACAGCACCGCTTATCCAGCCCAGCCAAATTGAATTGCCTGAAATCGGTAAATCATCTGTACCTC
CAGCAGAGCCTTTAGAAGTCACAATTGCCGCAAATGGTAATCTCACGTTACGTGATCGTGCCGGTGCGAACAGGGAGCAG
CAGGTGAATCGCAACCAGCTAGTGGAGCTGATCAAGGCCAGGCAGGCACAGAATACCAATCAGCCTGTCGTGATTGCAGC
AGATAAAAATGTTCGTTACGAAGAGGTAATTCAAGTAATGGATATGTTGCAACAGCAACAAATCCGTAAAATCGGGTTGT
TAACCAAGTCAAAATAA

Upstream 100 bases:

>100_bases
ATACCGCTCAGCTCGCCACTCGCTATGAAAGTTTTATAGAGGAAGTATCCAACGTTTTGCAGCGTCGTGTGGCCAAACCT
CGGGATATGGCAAATTTCTC

Downstream 100 bases:

>100_bases
ACTATCGGGGTGTATGCGCAATGGTCCGGCTACCCGGGAATAAGAACGAACCGGGAAAACTGCGTGCGGCATTGTTTGCC
CTGTTGGTGCATGCAGCATT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 138

Protein sequence:

>138_residues
MIPRRSKRRLMNEINVVPYIDVMLVLLIIFMITAPLIQPSQIELPEIGKSSVPPAEPLEVTIAANGNLTLRDRAGANREQ
QVNRNQLVELIKARQAQNTNQPVVIAADKNVRYEEVIQVMDMLQQQQIRKIGLLTKSK

Sequences:

>Translated_138_residues
MIPRRSKRRLMNEINVVPYIDVMLVLLIIFMITAPLIQPSQIELPEIGKSSVPPAEPLEVTIAANGNLTLRDRAGANREQ
QVNRNQLVELIKARQAQNTNQPVVIAADKNVRYEEVIQVMDMLQQQQIRKIGLLTKSK
>Mature_138_residues
MIPRRSKRRLMNEINVVPYIDVMLVLLIIFMITAPLIQPSQIELPEIGKSSVPPAEPLEVTIAANGNLTLRDRAGANREQ
QVNRNQLVELIKARQAQNTNQPVVIAADKNVRYEEVIQVMDMLQQQQIRKIGLLTKSK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=128, Percent_Identity=34.375, Blast_Score=73, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15648; Mature: 15648

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPRRSKRRLMNEINVVPYIDVMLVLLIIFMITAPLIQPSQIELPEIGKSSVPPAEPLEV
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
TIAANGNLTLRDRAGANREQQVNRNQLVELIKARQAQNTNQPVVIAADKNVRYEEVIQVM
EEECCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH
DMLQQQQIRKIGLLTKSK
HHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MIPRRSKRRLMNEINVVPYIDVMLVLLIIFMITAPLIQPSQIELPEIGKSSVPPAEPLEV
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEE
TIAANGNLTLRDRAGANREQQVNRNQLVELIKARQAQNTNQPVVIAADKNVRYEEVIQVM
EEECCCCEEEECCCCCCHHHHCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHH
DMLQQQQIRKIGLLTKSK
HHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9140974 [H]