Click here to switch to the map view.

The map label for this gene is ychE [H]

Identifier: 113970024

GI number: 113970024

Start: 1996459

End: 1997091

Strand: Direct

Name: ychE [H]

Synonym: Shewmr4_1684

Alternate gene names: 113970024

Gene position: 1996459-1997091 (Clockwise)

Preceding gene: 113970022

Following gene: 113970025

Centisome position: 42.42

GC content: 46.6

Gene sequence:

>633_bases
TTGGAGTTAACACTTTACGTTAAATTTTTTCTTGGTCTGGTTGCCATTATCAACCCCATTGGTTTGTTGCCAGTGTTTGT
GAGCCTTACTAGCCATCAAACCGAAGCCGAGCGTAACCATACGGGTAAAGTGGCTAACTTTGCGGTGGTGGTGATCCTGC
TGGTGACCATAGTGGCGGGGCAACATATTTTAAATATGTTTAGCATTTCACTCTCAGCCTTTAGGATCGCTGGCGGCACG
CTGATCGCGATTATTGCGATGTCGATGCTGCAGGGTAAATTAGGTGAAGTAAAACGCAACCAAGAGGAAGACCGCGAATC
TTCGGCGATGGAGTCCGTGGCGGTGGTGCCGTTAGCCTTGCCGTTAATGGCAGGCCCTGGTGCGATTAGTTCGGTCATCG
TGTTTGCCGCAGAGCATAATTCCTTCTCCAATTTTGTGGCGATGTTTATCACAGTGATCATTTTTGGCTTGGTAAGTTTT
GCCCTGTTCAGAATGGCGTCAATCATTTACAAAATTCTTGGTAAAACAGGCATTAACGTTATTACCCGTTTGATGGGGCT
ATTAATGCTGTCGATCGGGATTGAGGTGATTGCCGCTGGTATTAAAGGGCTGTTCCCACAACTCTTTAGCTAA

Upstream 100 bases:

>100_bases
CAAAAATCTCATTTTTCAGTCATCTGCGGTTAAGCTACTATACTTGCCCTTACGGTTAGTTTGATGAAATTGGCGTGACA
CGCTCAATAAGGACTGCAAC

Downstream 100 bases:

>100_bases
TTGAGCTTATCGGGGGAGGAGTATGTCCTCCCTTGTTTTGGTGGCGCATTTTTAGCTGCGACTTTTTAATCTCAATTTTT
TGCACAATGTGTTAACCGTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MELTLYVKFFLGLVAIINPIGLLPVFVSLTSHQTEAERNHTGKVANFAVVVILLVTIVAGQHILNMFSISLSAFRIAGGT
LIAIIAMSMLQGKLGEVKRNQEEDRESSAMESVAVVPLALPLMAGPGAISSVIVFAAEHNSFSNFVAMFITVIIFGLVSF
ALFRMASIIYKILGKTGINVITRLMGLLMLSIGIEVIAAGIKGLFPQLFS

Sequences:

>Translated_210_residues
MELTLYVKFFLGLVAIINPIGLLPVFVSLTSHQTEAERNHTGKVANFAVVVILLVTIVAGQHILNMFSISLSAFRIAGGT
LIAIIAMSMLQGKLGEVKRNQEEDRESSAMESVAVVPLALPLMAGPGAISSVIVFAAEHNSFSNFVAMFITVIIFGLVSF
ALFRMASIIYKILGKTGINVITRLMGLLMLSIGIEVIAAGIKGLFPQLFS
>Mature_210_residues
MELTLYVKFFLGLVAIINPIGLLPVFVSLTSHQTEAERNHTGKVANFAVVVILLVTIVAGQHILNMFSISLSAFRIAGGT
LIAIIAMSMLQGKLGEVKRNQEEDRESSAMESVAVVPLALPLMAGPGAISSVIVFAAEHNSFSNFVAMFITVIIFGLVSF
ALFRMASIIYKILGKTGINVITRLMGLLMLSIGIEVIAAGIKGLFPQLFS

Specific function: Unknown

COG id: COG2095

COG function: function code U; Multiple antibiotic transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0056 (marC) family [H]

Homologues:

Organism=Escherichia coli, GI1787494, Length=209, Percent_Identity=52.1531100478469, Blast_Score=235, Evalue=2e-63,
Organism=Escherichia coli, GI1787809, Length=194, Percent_Identity=34.020618556701, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789842, Length=192, Percent_Identity=27.6041666666667, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002771 [H]

Pfam domain/function: PF01914 MarC [H]

EC number: NA

Molecular weight: Translated: 22495; Mature: 22495

Theoretical pI: Translated: 9.69; Mature: 9.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.8 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELTLYVKFFLGLVAIINPIGLLPVFVSLTSHQTEAERNHTGKVANFAVVVILLVTIVAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
QHILNMFSISLSAFRIAGGTLIAIIAMSMLQGKLGEVKRNQEEDRESSAMESVAVVPLAL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
PLMAGPGAISSVIVFAAEHNSFSNFVAMFITVIIFGLVSFALFRMASIIYKILGKTGINV
HHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ITRLMGLLMLSIGIEVIAAGIKGLFPQLFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MELTLYVKFFLGLVAIINPIGLLPVFVSLTSHQTEAERNHTGKVANFAVVVILLVTIVAG
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
QHILNMFSISLSAFRIAGGTLIAIIAMSMLQGKLGEVKRNQEEDRESSAMESVAVVPLAL
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
PLMAGPGAISSVIVFAAEHNSFSNFVAMFITVIIFGLVSFALFRMASIIYKILGKTGINV
HHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ITRLMGLLMLSIGIEVIAAGIKGLFPQLFS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2015910; 9097039; 9278503 [H]