| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969906
Identifier: 113969906
GI number: 113969906
Start: 1844295
End: 1845260
Strand: Direct
Name: 113969906
Synonym: Shewmr4_1564
Alternate gene names: NA
Gene position: 1844295-1845260 (Clockwise)
Preceding gene: 113969905
Following gene: 113969910
Centisome position: 39.19
GC content: 48.76
Gene sequence:
>966_bases ATGTTACAACATCAAAGTGTCGGTCGCTGCACCACATTATTGCTAGGCGCCATTATCGCCAGTTTGAGCCTTGCTGGTTG CGGTAAAGTCAGCGAAGAGGTGCAAACGCCTGCGCAGAGCGCTGTATCTACTGACACTAAGGCGATTATTGGTCAATCAG AGAAGATGCGCTTATTGGCTGCACAACTGGATTTTCAGGCAAGAATTGATACGGGCGCGGCGAACACCTCATTACATGCT ATCGATCTGCAAGTTGAAGGCGGTGCGTCCGACAAGATGCAGGATAACATTGGTAAGACATTGCATTTTACCACCGAAAA CGAGGCGGGCGAGCAGCGGCGCTTAGCGGCGAAAATCCTAAAGACCACCACAGTGAATAACGCTCAAGGCAGTGAAGTCC GCTATTTGGTTGAGTTAGACATTGGTTTTGAGGGGCAACACCGTCTGGTTGCCGTTAACCTACGTGACCGAAGCCATATG GATTACAAGTTACTGATCGGCCGTAATTGGTTAGCGGGCCGTTATGTTGTCGATGTGGCCGAGAAACGTCTGATTGGCCC GACAGCGTTTATCAAAGTGAAAGAAGCCGGGCTGACCTTTAAAACGCGCATCGATACGGGGGCGGTTGAAAATTCCCTGC ATGCGATTGATCTCAAGATTGACGATGAAGATCCTACCAATATGGATAACAACATCGGCAAGTGGCTTAATTTCACTACC GAAAATGAGCGTGGTGAGGAAAAGCGGTTAAGGGCACGGATTGTCGATACTTCGCTTATCCGTAACGCGCAGGGGAGTGA AGTGCGTTATATGGTCGAATTGACCTTAGGTGAGCCTGGGCGGGAGTATCCCGTTAAAGTAAACCTTAAGGACCGTAGTC AAATGTCCAATAAACTCTTAATCGGCCGTAACTGGTTACAGGGTCATTATTTGGTGGATGTAACACTCGATAAGACGAGC GACTAA
Upstream 100 bases:
>100_bases GGCTCTTTTCCTTCGCTTTTGTGCTATCACTAGCCCCTACATCGACCTAGGTGATGGGCTCAAAGTGGCTTTTCCGTCAT CGTTCAGATAAGGAGTGAGG
Downstream 100 bases:
>100_bases TTTCACTCTATAGATCTGTTTTTAGCATGACCATTGCTATACCGAAGGTAATGGCCAGTGGCACTCGATTAGGGTGCCGC GATTGAGCTCACTCTCTACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 321; Mature: 321
Protein sequence:
>321_residues MLQHQSVGRCTTLLLGAIIASLSLAGCGKVSEEVQTPAQSAVSTDTKAIIGQSEKMRLLAAQLDFQARIDTGAANTSLHA IDLQVEGGASDKMQDNIGKTLHFTTENEAGEQRRLAAKILKTTTVNNAQGSEVRYLVELDIGFEGQHRLVAVNLRDRSHM DYKLLIGRNWLAGRYVVDVAEKRLIGPTAFIKVKEAGLTFKTRIDTGAVENSLHAIDLKIDDEDPTNMDNNIGKWLNFTT ENERGEEKRLRARIVDTSLIRNAQGSEVRYMVELTLGEPGREYPVKVNLKDRSQMSNKLLIGRNWLQGHYLVDVTLDKTS D
Sequences:
>Translated_321_residues MLQHQSVGRCTTLLLGAIIASLSLAGCGKVSEEVQTPAQSAVSTDTKAIIGQSEKMRLLAAQLDFQARIDTGAANTSLHA IDLQVEGGASDKMQDNIGKTLHFTTENEAGEQRRLAAKILKTTTVNNAQGSEVRYLVELDIGFEGQHRLVAVNLRDRSHM DYKLLIGRNWLAGRYVVDVAEKRLIGPTAFIKVKEAGLTFKTRIDTGAVENSLHAIDLKIDDEDPTNMDNNIGKWLNFTT ENERGEEKRLRARIVDTSLIRNAQGSEVRYMVELTLGEPGREYPVKVNLKDRSQMSNKLLIGRNWLQGHYLVDVTLDKTS D >Mature_321_residues MLQHQSVGRCTTLLLGAIIASLSLAGCGKVSEEVQTPAQSAVSTDTKAIIGQSEKMRLLAAQLDFQARIDTGAANTSLHA IDLQVEGGASDKMQDNIGKTLHFTTENEAGEQRRLAAKILKTTTVNNAQGSEVRYLVELDIGFEGQHRLVAVNLRDRSHM DYKLLIGRNWLAGRYVVDVAEKRLIGPTAFIKVKEAGLTFKTRIDTGAVENSLHAIDLKIDDEDPTNMDNNIGKWLNFTT ENERGEEKRLRARIVDTSLIRNAQGSEVRYMVELTLGEPGREYPVKVNLKDRSQMSNKLLIGRNWLQGHYLVDVTLDKTS D
Specific function: Unknown
COG id: COG4067
COG function: function code O; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35586; Mature: 35586
Theoretical pI: Translated: 6.89; Mature: 6.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQHQSVGRCTTLLLGAIIASLSLAGCGKVSEEVQTPAQSAVSTDTKAIIGQSEKMRLLA CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHCCCCHHHHCCCHHHEEEE AQLDFQARIDTGAANTSLHAIDLQVEGGASDKMQDNIGKTLHFTTENEAGEQRRLAAKIL EECCEEEEECCCCCCCEEEEEEEEECCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHH KTTTVNNAQGSEVRYLVELDIGFEGQHRLVAVNLRDRSHMDYKLLIGRNWLAGRYVVDVA HHEECCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCHHEEEHH EKRLIGPTAFIKVKEAGLTFKTRIDTGAVENSLHAIDLKIDDEDPTNMDNNIGKWLNFTT HHHHCCCEEEEEEEECCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHEEECC ENERGEEKRLRARIVDTSLIRNAQGSEVRYMVELTLGEPGREYPVKVNLKDRSQMSNKLL CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHCCCEEE IGRNWLQGHYLVDVTLDKTSD EECCCCCCEEEEEEEECCCCC >Mature Secondary Structure MLQHQSVGRCTTLLLGAIIASLSLAGCGKVSEEVQTPAQSAVSTDTKAIIGQSEKMRLLA CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHHHCCCCHHHHCCCHHHEEEE AQLDFQARIDTGAANTSLHAIDLQVEGGASDKMQDNIGKTLHFTTENEAGEQRRLAAKIL EECCEEEEECCCCCCCEEEEEEEEECCCCCCHHHHCCCCEEEEEECCCCCHHHHHHHHHH KTTTVNNAQGSEVRYLVELDIGFEGQHRLVAVNLRDRSHMDYKLLIGRNWLAGRYVVDVA HHEECCCCCCCEEEEEEEEECCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCHHEEEHH EKRLIGPTAFIKVKEAGLTFKTRIDTGAVENSLHAIDLKIDDEDPTNMDNNIGKWLNFTT HHHHCCCEEEEEEEECCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHEEECC ENERGEEKRLRARIVDTSLIRNAQGSEVRYMVELTLGEPGREYPVKVNLKDRSQMSNKLL CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCEEEEECCHHHCCCEEE IGRNWLQGHYLVDVTLDKTSD EECCCCCCEEEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA