| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is ybbP [H]
Identifier: 113969822
GI number: 113969822
Start: 1733803
End: 1736304
Strand: Direct
Name: ybbP [H]
Synonym: Shewmr4_1480
Alternate gene names: 113969822
Gene position: 1733803-1736304 (Clockwise)
Preceding gene: 113969821
Following gene: 113969823
Centisome position: 36.84
GC content: 52.56
Gene sequence:
>2502_bases ATGGAGCTTAATTTGGCATGGCGCCTGTTTAAGCGCGAGCTGCAACAGGGGCAGTTGTTATTGATAATCCTCGCCATTAC CTTGGCGGTGCTGTCGGTCAGTGGTCTTGCGCGGGTCAGTGAGCGTTTGCAGGTCGCGATAAACGGGCAAGCGACTCAGT TTATCGCCGCCGATCGCATCATCGACTCTCCCGTTCAAATTGATGCCAGCATTCTGGCTAAGGCCGACGAGCTTGGTCTT AAGCATGTGACCAATATGCAATTTAACTCTATGGTGTATGCGGGGGATAAGTTTCAGTTAGTCACAGTGCGGGCGGTCGA GTCTGGTTATCCACTTAAGGGCGACATAGAACTTAAAGCGGCCAATGGCCAAGATGAAAAAGCCCAAGGCTTGCCCCACG CCGATGAGGTGTGGTTTGAGAGTCGCTTAGGGGGACTCTTGGGATACCCGCAAACACTGGAGTTAGGCAACAGTGAGTTT CGTTTAAGTCAAGAAATCAGCCGCTTACCCGATGCGGGTTTTAATCCATTCGCTTCTTCCCCCGTGGTGTTAATGCGGAT TGAAGATGTCGCCAAGACTGGGGTTATTCAACCCGGCAGCCGAGTGACCTATCTGTATCAATTTGTGGGTGAAGAAAGCG CCTTCAGCGCCTTTGAAAATAGCGTTAAACCGCTGCTGAATAATTCCCAGCGCTGGGTCGATGTGCAGTCTGGCGACTCA CCGATAGCGGGCGCGGTGAAGCGGGCGGAGCGTTTTTTACTGCTGGCAAGTTTGCTCGGTATTGCGCTGGCCTGCGCCGC GATTGGGATTGCTGCCCAGCGTTACTGCCAACGTCATTATGATGTGGTCGCCATGCTCAAAACCTTTGGCGCCTCATCAA CTCAAATCCGTCGACTATTCGGCATCCATTTACTGCTGGTGACGCTGTTTGGCATTGTGCTGGGGTTAATCGGCGGGGCA CTGCTGGATTTAGGCATTAATCAACTATTACCCCCTGAAATCGCTGCTTATTCGCCGCCGTTGACTCGGCCGCTACTGCT TGGGATCAGCACAGGGCTTATCAGCGCCTTTATGTTTTCGGCCTATCCTTTAATGCGTCTGCTGGCCATTCCGCCACTGC GCGTTTTACAAAGGCAACTCGAGGGCTTGCAGCTCGGCATGTGGCTGCATTTACTCCTCAGTTTAGGGGCGATGGCACTT TTGGGATATTTGTATTCCCAAAGCTGGGCACTGACACTGACGGTGGTCGCGGCTGTGCTGCTACTGGGCGTATTGCTCAG TATTTTAGGCTTTGTGATGATCCGCCTTGGTCACAGTGTCGGCATGAAAACCACCAATCCCTTGCAACTGGCTCTCGCGG GGTTACGCCGCCGCGCGCGGCAAAATGCGGTGCAATTGGTGGGCTTTAGTGCGGCCTTGGTATTGCTATTGACCATTTTG GCCCTGAGGCAAGATTTACTGAACGAGTGGCAAAAACAGCTGCCCGAGAATGCGCCCAACTATTTCTTGGTCAATATCGC CCCCGATGATGCTAAGCCATTAAATGACTTTATGGCGCAAAAGGGCATAGCTGCAACGGATATCTATCCCGTGATTCGCG GCCGCTTGACTCAAATCAATGGTGAAACCTTGATTTCCGACGAGCAGGCCGAAGCGGGAGAGAAGGGGCGAGTAGGGATT TCCCGCGAGCTTAATCTCACCTGGCGCAATAGCTTACCCGCCAACAATGAGTTAGTTGAAGGGCATTTTAATCAGGCGGC GGATGAGGTTTCTGTCGAGTCAGGTGTTGCCGATCGTTTAGGACTAAAGCTAGGCGATACGCTGACTTACATGATTGATA ACCAAGAGCTTAGGGTCAAGGTCGCTAGTATCCGTGCCGTGCACTGGGAAACCATGCAACCAAACTTCTTTATGATCTTC ACTCAAGAAGCGCTGGCGCCCTTTGCCTATACCTCGATGGCAAGCTTCTACCTCGACGATAAAAAAACGGATGTACAAGG GAGTGATGCTCCGAAGAGCACAGTGATCCTCGAACTTATCCAGCAGTTCCCAACGGTGTCGATTATCGATGTCGGCGCCA TGGTGGGGCAATTGCGGCAGATTATTGAGCAGGTGTCCCTGTCGCTGACGTTGGTCTTGGTTCTCGTTTTACTGGCCAGT TCTTTAGTGCTTATTGCGCAAACCGAGGCGGGAATGGCGACACGCCAGCGTGAACTCGCAGTGCTGCGCACCTTTGGCGC CTCAGGCTGGTTACTGCGTAGCGCCACTGGGCTTGAATTTGCGTTACTGGGGGGCATAGCTGGGGTACTTGCAGTGATAG TGGCCGAATTTGCGCTGTATCTGTTAAAGACCCAAGTGTTTGAACTCAATGTGTATATGCACTGGCCCTGGTGGGGGATT GCCCCTGTCTGCGGTGCCTTGTTAGTTGCATTACTGGGTGTTTGGCGCTGCCGTCAATTGCTCAATCAATCCTGCGCCGA ATTATTAAAAGCGGGCGCTTAA
Upstream 100 bases:
>100_bases ACTGGTTATGGACAACGGCCACTTACAGGAAGAGTTAGATTCGGCCTCATCGCACAGCGTGAATGACAACCTTGAATTAA GCGCCAAGGAGGCCTAACCC
Downstream 100 bases:
>100_bases GTTAAGGTGAGTTGGAGGTTAAGGCAAATGCCTTAACACCATCATTTGTAACCATGATTTGTAAAATAAAAAGCACTGGC CTAAACCAGTGCTTTTTTAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 833; Mature: 833
Protein sequence:
>833_residues MELNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRIIDSPVQIDASILAKADELGL KHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIELKAANGQDEKAQGLPHADEVWFESRLGGLLGYPQTLELGNSEF RLSQEISRLPDAGFNPFASSPVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESAFSAFENSVKPLLNNSQRWVDVQSGDS PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLFGIHLLLVTLFGIVLGLIGGA LLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISAFMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMAL LGYLYSQSWALTLTVVAAVLLLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLTIL ALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLTQINGETLISDEQAEAGEKGRVGI SRELNLTWRNSLPANNELVEGHFNQAADEVSVESGVADRLGLKLGDTLTYMIDNQELRVKVASIRAVHWETMQPNFFMIF TQEALAPFAYTSMASFYLDDKKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVLVLLAS SLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALYLLKTQVFELNVYMHWPWWGI APVCGALLVALLGVWRCRQLLNQSCAELLKAGA
Sequences:
>Translated_833_residues MELNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRIIDSPVQIDASILAKADELGL KHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIELKAANGQDEKAQGLPHADEVWFESRLGGLLGYPQTLELGNSEF RLSQEISRLPDAGFNPFASSPVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESAFSAFENSVKPLLNNSQRWVDVQSGDS PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLFGIHLLLVTLFGIVLGLIGGA LLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISAFMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMAL LGYLYSQSWALTLTVVAAVLLLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLTIL ALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLTQINGETLISDEQAEAGEKGRVGI SRELNLTWRNSLPANNELVEGHFNQAADEVSVESGVADRLGLKLGDTLTYMIDNQELRVKVASIRAVHWETMQPNFFMIF TQEALAPFAYTSMASFYLDDKKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVLVLLAS SLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALYLLKTQVFELNVYMHWPWWGI APVCGALLVALLGVWRCRQLLNQSCAELLKAGA >Mature_833_residues MELNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRIIDSPVQIDASILAKADELGL KHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIELKAANGQDEKAQGLPHADEVWFESRLGGLLGYPQTLELGNSEF RLSQEISRLPDAGFNPFASSPVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESAFSAFENSVKPLLNNSQRWVDVQSGDS PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLFGIHLLLVTLFGIVLGLIGGA LLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISAFMFSAYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMAL LGYLYSQSWALTLTVVAAVLLLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLTIL ALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLTQINGETLISDEQAEAGEKGRVGI SRELNLTWRNSLPANNELVEGHFNQAADEVSVESGVADRLGLKLGDTLTYMIDNQELRVKVASIRAVHWETMQPNFFMIF TQEALAPFAYTSMASFYLDDKKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVLVLLAS SLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALYLLKTQVFELNVYMHWPWWGI APVCGALLVALLGVWRCRQLLNQSCAELLKAGA
Specific function: Unknown
COG id: COG3127
COG function: function code Q; Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ABC-4 integral membrane protein family [H]
Homologues:
Organism=Escherichia coli, GI1786704, Length=812, Percent_Identity=37.192118226601, Blast_Score=473, Evalue=1e-134,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003838 [H]
Pfam domain/function: PF02687 FtsX [H]
EC number: NA
Molecular weight: Translated: 90869; Mature: 90869
Theoretical pI: Translated: 6.62; Mature: 6.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRI CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHH IDSPVQIDASILAKADELGLKHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIELKA HCCCHHCCHHHHHHHHHHCHHHHCCCCCCCEEEECCCEEEEEEEEECCCCCCCCCEEEEE ANGQDEKAQGLPHADEVWFESRLGGLLGYPQTLELGNSEFRLSQEISRLPDAGFNPFASS CCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC PVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESAFSAFENSVKPLLNNSQRWVDVQSGDS CEEEEEEHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH GIHLLLVTLFGIVLGLIGGALLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISAFMFS HHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHH AYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLYSQSWALTLTVVAAVL HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLTIL HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLTQIN HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHCHHEEEC GETLISDEQAEAGEKGRVGISRELNLTWRNSLPANNELVEGHFNQAADEVSVESGVADRL CCEEECCCHHCCCCCCCCCCCEEEEEEECCCCCCCCCHHCCHHHHHHHHHHHHCCCHHHH GLKLGDTLTYMIDNQELRVKVASIRAVHWETMQPNFFMIFTQEALAPFAYTSMASFYLDD CCCCCCEEEEEECCCHHEEEEEHEEEEEEEECCCCEEEEEEHHHHCHHHHHHHHHHHCCC KKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVLVLLAS CCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALY CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH LLKTQVFELNVYMHWPWWGIAPVCGALLVALLGVWRCRQLLNQSCAELLKAGA HHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MELNLAWRLFKRELQQGQLLLIILAITLAVLSVSGLARVSERLQVAINGQATQFIAADRI CCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHH IDSPVQIDASILAKADELGLKHVTNMQFNSMVYAGDKFQLVTVRAVESGYPLKGDIELKA HCCCHHCCHHHHHHHHHHCHHHHCCCCCCCEEEECCCEEEEEEEEECCCCCCCCCEEEEE ANGQDEKAQGLPHADEVWFESRLGGLLGYPQTLELGNSEFRLSQEISRLPDAGFNPFASS CCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC PVVLMRIEDVAKTGVIQPGSRVTYLYQFVGEESAFSAFENSVKPLLNNSQRWVDVQSGDS CEEEEEEHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC PIAGAVKRAERFLLLASLLGIALACAAIGIAAQRYCQRHYDVVAMLKTFGASSTQIRRLF CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH GIHLLLVTLFGIVLGLIGGALLDLGINQLLPPEIAAYSPPLTRPLLLGISTGLISAFMFS HHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHH AYPLMRLLAIPPLRVLQRQLEGLQLGMWLHLLLSLGAMALLGYLYSQSWALTLTVVAAVL HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH LLGVLLSILGFVMIRLGHSVGMKTTNPLQLALAGLRRRARQNAVQLVGFSAALVLLLTIL HHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ALRQDLLNEWQKQLPENAPNYFLVNIAPDDAKPLNDFMAQKGIAATDIYPVIRGRLTQIN HHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHCHHEEEC GETLISDEQAEAGEKGRVGISRELNLTWRNSLPANNELVEGHFNQAADEVSVESGVADRL CCEEECCCHHCCCCCCCCCCCEEEEEEECCCCCCCCCHHCCHHHHHHHHHHHHCCCHHHH GLKLGDTLTYMIDNQELRVKVASIRAVHWETMQPNFFMIFTQEALAPFAYTSMASFYLDD CCCCCCEEEEEECCCHHEEEEEHEEEEEEEECCCCEEEEEEHHHHCHHHHHHHHHHHCCC KKTDVQGSDAPKSTVILELIQQFPTVSIIDVGAMVGQLRQIIEQVSLSLTLVLVLVLLAS CCCCCCCCCCCHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SLVLIAQTEAGMATRQRELAVLRTFGASGWLLRSATGLEFALLGGIAGVLAVIVAEFALY CEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHH LLKTQVFELNVYMHWPWWGIAPVCGALLVALLGVWRCRQLLNQSCAELLKAGA HHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]