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The map label for this gene is tnpA [H]

Identifier: 113969786

GI number: 113969786

Start: 1689953

End: 1691176

Strand: Direct

Name: tnpA [H]

Synonym: Shewmr4_1444

Alternate gene names: 113969786

Gene position: 1689953-1691176 (Clockwise)

Preceding gene: 113969784

Following gene: 113969787

Centisome position: 35.91

GC content: 46.9

Gene sequence:

>1224_bases
ATGAGTGAAGCTGCTTTATATCAACAAATCTTGGGGCTAAAGGCACCTTGGGTCGTATCCAGTGTTCAACTCGATGAACC
ACGTCAGAGCATAATTGTTACCATCGCCTACGCTTCTCAAGCAGGCTTTAAATGCCCTATATGCCACAATGCGAGTCGCC
ATTACGATTCCCGTTTCCGAAAATGGCGTCACTTGGATACCTGCCAGTATCAAACGCTCATTCAAGCTAACGTGCCACGA
GTACACTGTACCTCACACGGTTATCAAACCCTCCAAGTCCCATGGGCCAGTGGCAGCAGTCGTTACACTGAATTGTTTGA
GATGCGTGTATTAACCTTGCTTGCGATGAGTTCTCTTAATGCCGTCAGTCGGTTCTTTAAACTGAGCTGGGGAGCCATGG
ATAGGATTATGGCGCGCGCTGTTTATCGTGGACTGGCAAAACGCAAACTGATTAATACCGATTATTTATTGGTCGATGAA
ACCGCTCTTAAAAAGGGGCATGAATATGTCACGCTGCTCTCTAATCATGAAGGACAAGTTTTAGCGGTTTCAGAGGGACG
TTCAGCTGCAAGTTTTGATGCCTGCCTAAAACAGCTGCCTGCAGATGCATTACGTCAAACTCAGTCTATCTGTATGGATA
TGAGCCCTACTTACATTAAAGCAGCAAAGAAAGCGCTGCCCAATGCAGAGAGGAAAATCGCATTTGATCACTTCCATGTA
GCCAAGATGCTAACGGAGGCGGTTAACCGGATCCGCAAAGACGAGTTATTCAGGTTGGCGCCGTCAATGCGGCAAGAGGC
ACATCGCACACGTTTTTACTGGTTAAAGCGACGAGATAATCTCAGCGAACCCGACCGAGAGAGGGTCAATAGACTCATCC
CGGCAATGATGAATACGGCTCTTGCATGGTATTTTAAAGAGCAGGCTCGGAACATCTGGCATGGCAATAGTGTTCGAGGA
ACAAAGCAGCGATGGAAAGATTGGATAGCTTTAGCTAAAGCCAGCGGTCTCAAACCCTTAATGGCAGTGGCAGATACAAT
CGAGAACAAACTCTGGGGCATACTTAATGCCATGCGCTTTGGTCTATCAAACGGTTTGGCAGAAGCAATCAATAGCCAAG
TTAGACAGCTCAGAGTAAAGGCTATGGGGTATCGAAATTCAGAGCGATTTCAACGTGCCATCCTCTTTCACTTTGGAAAG
CTGGATATGGGGTTCCACCAATAA

Upstream 100 bases:

>100_bases
TGGCCTTACCAGAAATCGGCTAATAATGTATAGGTATGGCTCTTCTCTGAACATGGTGGAATAGGTATAGTTCTAGCCAA
ATTCCTCTTAAATTTCAGTG

Downstream 100 bases:

>100_bases
CAACGAAGAGCCATAGGTATACAGTCGTATTTAAATTTAGGTATTTTTGTATGATTTTCAGACAAAATCAGTGCACACTT
ATTCCATCCGAAATAAATAA

Product: transposase, IS204/IS1001/IS1096/IS1165 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MSEAALYQQILGLKAPWVVSSVQLDEPRQSIIVTIAYASQAGFKCPICHNASRHYDSRFRKWRHLDTCQYQTLIQANVPR
VHCTSHGYQTLQVPWASGSSRYTELFEMRVLTLLAMSSLNAVSRFFKLSWGAMDRIMARAVYRGLAKRKLINTDYLLVDE
TALKKGHEYVTLLSNHEGQVLAVSEGRSAASFDACLKQLPADALRQTQSICMDMSPTYIKAAKKALPNAERKIAFDHFHV
AKMLTEAVNRIRKDELFRLAPSMRQEAHRTRFYWLKRRDNLSEPDRERVNRLIPAMMNTALAWYFKEQARNIWHGNSVRG
TKQRWKDWIALAKASGLKPLMAVADTIENKLWGILNAMRFGLSNGLAEAINSQVRQLRVKAMGYRNSERFQRAILFHFGK
LDMGFHQ

Sequences:

>Translated_407_residues
MSEAALYQQILGLKAPWVVSSVQLDEPRQSIIVTIAYASQAGFKCPICHNASRHYDSRFRKWRHLDTCQYQTLIQANVPR
VHCTSHGYQTLQVPWASGSSRYTELFEMRVLTLLAMSSLNAVSRFFKLSWGAMDRIMARAVYRGLAKRKLINTDYLLVDE
TALKKGHEYVTLLSNHEGQVLAVSEGRSAASFDACLKQLPADALRQTQSICMDMSPTYIKAAKKALPNAERKIAFDHFHV
AKMLTEAVNRIRKDELFRLAPSMRQEAHRTRFYWLKRRDNLSEPDRERVNRLIPAMMNTALAWYFKEQARNIWHGNSVRG
TKQRWKDWIALAKASGLKPLMAVADTIENKLWGILNAMRFGLSNGLAEAINSQVRQLRVKAMGYRNSERFQRAILFHFGK
LDMGFHQ
>Mature_406_residues
SEAALYQQILGLKAPWVVSSVQLDEPRQSIIVTIAYASQAGFKCPICHNASRHYDSRFRKWRHLDTCQYQTLIQANVPRV
HCTSHGYQTLQVPWASGSSRYTELFEMRVLTLLAMSSLNAVSRFFKLSWGAMDRIMARAVYRGLAKRKLINTDYLLVDET
ALKKGHEYVTLLSNHEGQVLAVSEGRSAASFDACLKQLPADALRQTQSICMDMSPTYIKAAKKALPNAERKIAFDHFHVA
KMLTEAVNRIRKDELFRLAPSMRQEAHRTRFYWLKRRDNLSEPDRERVNRLIPAMMNTALAWYFKEQARNIWHGNSVRGT
KQRWKDWIALAKASGLKPLMAVADTIENKLWGILNAMRFGLSNGLAEAINSQVRQLRVKAMGYRNSERFQRAILFHFGKL
DMGFHQ

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3464

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transposase 12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002560 [H]

Pfam domain/function: PF01610 Transposase_12 [H]

EC number: NA

Molecular weight: Translated: 46754; Mature: 46623

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: PS00041 HTH_ARAC_FAMILY_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAALYQQILGLKAPWVVSSVQLDEPRQSIIVTIAYASQAGFKCPICHNASRHYDSRFR
CCHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHH
KWRHLDTCQYQTLIQANVPRVHCTSHGYQTLQVPWASGSSRYTELFEMRVLTLLAMSSLN
HHHCCCHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
AVSRFFKLSWGAMDRIMARAVYRGLAKRKLINTDYLLVDETALKKGHEYVTLLSNHEGQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCEEEEEECCCCCE
LAVSEGRSAASFDACLKQLPADALRQTQSICMDMSPTYIKAAKKALPNAERKIAFDHFHV
EEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
AKMLTEAVNRIRKDELFRLAPSMRQEAHRTRFYWLKRRDNLSEPDRERVNRLIPAMMNTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHH
LAWYFKEQARNIWHGNSVRGTKQRWKDWIALAKASGLKPLMAVADTIENKLWGILNAMRF
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
GLSNGLAEAINSQVRQLRVKAMGYRNSERFQRAILFHFGKLDMGFHQ
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
SEAALYQQILGLKAPWVVSSVQLDEPRQSIIVTIAYASQAGFKCPICHNASRHYDSRFR
CHHHHHHHHHCCCCCCEEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHHHHHHHH
KWRHLDTCQYQTLIQANVPRVHCTSHGYQTLQVPWASGSSRYTELFEMRVLTLLAMSSLN
HHHCCCHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
AVSRFFKLSWGAMDRIMARAVYRGLAKRKLINTDYLLVDETALKKGHEYVTLLSNHEGQV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHCCCCEEEEEECCCCCE
LAVSEGRSAASFDACLKQLPADALRQTQSICMDMSPTYIKAAKKALPNAERKIAFDHFHV
EEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHH
AKMLTEAVNRIRKDELFRLAPSMRQEAHRTRFYWLKRRDNLSEPDRERVNRLIPAMMNTA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCHHHHHHHHHHHHHHHH
LAWYFKEQARNIWHGNSVRGTKQRWKDWIALAKASGLKPLMAVADTIENKLWGILNAMRF
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
GLSNGLAEAINSQVRQLRVKAMGYRNSERFQRAILFHFGKLDMGFHQ
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8093238 [H]