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The map label for this gene is secD [H]

Identifier: 113969726

GI number: 113969726

Start: 1611026

End: 1612876

Strand: Direct

Name: secD [H]

Synonym: Shewmr4_1384

Alternate gene names: 113969726

Gene position: 1611026-1612876 (Clockwise)

Preceding gene: 113969725

Following gene: 113969727

Centisome position: 34.23

GC content: 50.62

Gene sequence:

>1851_bases
GTGTTAAATAAATACCCAATGTGGAAAAACATTATGGTGGTGCTCGTCATCGCCATAGGTTGTTTCTATGCCGTACCTAA
CCTGTTCGGTGAAGATCATGCGGTGCAAGTAGTGGCGACTCGAGGTGCTGAAGTCACGGCATCTACCCAAGCCAGAGTGA
ACGAGCTGTTAGCCAGTAAGGGCATTGCGGTAAAACGTTCTGAGCTTGAAAAAGGCCAATTGTTGGTTCGCGTACAAAAC
GCGGATCAACAGTTGCTGGCCAAGGAAACCATCGCCGAAGAATTAGGTGATAAGTTTACCGTGGCGCTTAACCTTGCCCC
TGCGACGCCGCAGTGGCTCGAGTCCATGGGCGGTAGCCCAATGAAACTCGGTCTGGACCTTCGTGGTGGTGTGCACTTCT
TGATGGAAGTGGACATGGGCGAAGCCATCCGCAAGATGGAAGAGGCTAAAATTGCCGATTTCCGTTCACAATTGCGTGAA
GAAAAAATCCGTTACGCTGGCATTCGCAACAATGCTCAAGGTATCGAGATTAAATTCCGTGATGCCGAAAGTTTAGCCAG
TGCAGAACGTTTCTTAAAATCTCGCAGCAACGATATGGTGTTCAGCGATGTGAGCAAGGGTGAAGATTTTGCCCTGCAAG
CCGTGATGAGCGAAATCTATCTCAAGCAGATTAAAGAAGAAGCGCTGCAGCAAAACATTACCACTATCCGTAACCGTGTG
AACGAGTTAGGGGTAGCTGAGCCTGTGGTCCAACGCCAAGGTGCTGAGCGCATTATCGTTGAGCTGCCAGGTGTACAAGA
CACTGCCCGCGCCAAGGAAATCTTAGGTGCAACCGCATCGATTGAATTCCACATGGTGGACGATAAGGCCGACCCAAATG
CGGCGCAATCTGGTCGTGTATCAGCGGGTTCTGAGGTGTATCAACGCCGTGAAGGCGGTCAAGTGGTATTGAAGAAAGAA
GTGATGCTAACGGGTGATCATATCACTGGCGCACAACCTAGCTTCGACCAATACAGCCGTCCACAGGTGAGCATCAACCT
CGATGCCAAAGGCGGTACTATTTTCTCTAACGTGACTAAGGACAATATCGGTAAACCGATGGCGACCTTATTCATCGAAT
ATAAAGACAGCGGTGAGCGTAACGCCGATGGCAGCGTCAAGATGCAGAAAATCCAAGAAGTGATTTCTGTGGCGACCATT
CAAGCGCGTTTAGGTCGTAACTTTGTGATCACCGGCTTAAGCCACGGTGAAGCACAAAACCTCGCACTGCTGCTGCGTGC
CGGTGCCCTGATTGCGCCAGTATCTATTGTGGAAGAACGTACTATCGGTCCAAGCCTAGGTGCGGAAAACATCGAAAGCG
GTGTGCAAGCCATGATTTGGGGTATGGCAGTCGTACTTATCTTCATGCTGGTTTACTACCGTAGTTTCGGCTTGATCGCT
AACTTAGCCTTAACGGCCAACTTAGTGATGGTGGTTGGGGTGATGTCTATGATCCCTGGCGCCGTATTAACCCTGCCTGG
TATTGCCGGTATGGTGTTAACTGTGGGTATGGCGGTTGACGGTAACGTACTGATTTACGAACGTATCCGTGAAGAGTTAC
GTGCAGGTCGCAGCGTACAGCAGGCGATTCACGAAGGTTACGGTAACGCATTCTCTACCATCGCCGACGCTAACATCACT
ACCTTCTTGACAGCGCTGATCTTGTTCGCCGTGGGTACTGGCGCGATCAAAGGCTTCGCGGTGACCCTGATGATCGGTAT
TGCGACATCGATGTTTACCGCTATCGTGGGTACTCGCTCAATCGTGAACGCGATTTGGGGCGGTAAGCGCGTGAAGACGC
TGTCTATCTAA

Upstream 100 bases:

>100_bases
GCTTGAACGACACTACTCAAATTACAATTAAAAAAGATTACATTGCAGCTGTATTGCCTAAGGGCTCTATCCAGTCGTTG
TAAGCCAAGAGGGCTCAGGC

Downstream 100 bases:

>100_bases
GGGGAAGCGATAATGTTAGAAATTTTGTCTTTAAAACGTACGGTTAACTTCCTCCGTCATGCGCTGCCTATCAGTATCAT
GTCTGCCATTTTGGTATTTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 616; Mature: 616

Protein sequence:

>616_residues
MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASKGIAVKRSELEKGQLLVRVQN
ADQQLLAKETIAEELGDKFTVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLRE
EKIRYAGIRNNAQGIEIKFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSEIYLKQIKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRVSAGSEVYQRREGGQVVLKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI

Sequences:

>Translated_616_residues
MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASKGIAVKRSELEKGQLLVRVQN
ADQQLLAKETIAEELGDKFTVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLRE
EKIRYAGIRNNAQGIEIKFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSEIYLKQIKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRVSAGSEVYQRREGGQVVLKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI
>Mature_616_residues
MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASKGIAVKRSELEKGQLLVRVQN
ADQQLLAKETIAEELGDKFTVALNLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLRE
EKIRYAGIRNNAQGIEIKFRDAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSEIYLKQIKEEALQQNITTIRNRV
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRVSAGSEVYQRREGGQVVLKKE
VMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATI
QARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLIA
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANIT
TFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=618, Percent_Identity=59.2233009708738, Blast_Score=735, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 66660; Mature: 66660

Theoretical pI: Translated: 6.82; Mature: 6.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECHHHHHHHHHHHHC
GIAVKRSELEKGQLLVRVQNADQQLLAKETIAEELGDKFTVALNLAPATPQWLESMGGSP
CCEEEHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLREEKIRYAGIRNNAQGIEIKFR
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
DAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSEIYLKQIKEEALQQNITTIRNRV
CHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRV
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
SAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTK
CCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCH
DNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQN
HHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLIA
HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHCHHHH
QAIHEGYGNAFSTIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRS
HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNAIWGGKRVKTLSI
HHHHHCCCCCEEEECC
>Mature Secondary Structure
MLNKYPMWKNIMVVLVIAIGCFYAVPNLFGEDHAVQVVATRGAEVTASTQARVNELLASK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEECHHHHHHHHHHHHC
GIAVKRSELEKGQLLVRVQNADQQLLAKETIAEELGDKFTVALNLAPATPQWLESMGGSP
CCEEEHHHCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHCCCCC
MKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLREEKIRYAGIRNNAQGIEIKFR
EEEEEEECCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC
DAESLASAERFLKSRSNDMVFSDVSKGEDFALQAVMSEIYLKQIKEEALQQNITTIRNRV
CHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKADPNAAQSGRV
HHCCCCCHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
SAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSFDQYSRPQVSINLDAKGGTIFSNVTK
CCCHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCEEEECCCH
DNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQN
HHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHH
LALLLRAGALIAPVSIVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYRSFGLIA
HHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRAGRSVQ
HHHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHEEECCCEEEHHHHHHHHHHCHHHH
QAIHEGYGNAFSTIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRS
HHHHHCCCCHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVNAIWGGKRVKTLSI
HHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]