Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 113969727

GI number: 113969727

Start: 1612889

End: 1613836

Strand: Direct

Name: secF [H]

Synonym: Shewmr4_1385

Alternate gene names: 113969727

Gene position: 1612889-1613836 (Clockwise)

Preceding gene: 113969726

Following gene: 113969728

Centisome position: 34.27

GC content: 49.37

Gene sequence:

>948_bases
ATGTTAGAAATTTTGTCTTTAAAACGTACGGTTAACTTCCTCCGTCATGCGCTGCCTATCAGTATCATGTCTGCCATTTT
GGTATTTGGTTCGCTGGTGTCCTTGGCGACCAAAGGCATTAACTGGGGTTTAGACTTTACCGGCGGTACTGTGGTTGAGA
TGGAGTTCACTCAACCTGTCGATTTGAACGTGTTACGTACTAAGCTGTCTGCGCCTGAATTGGACGGTGCAGTGGTGCAA
AACTTCGGTTCGAGCCGTGACGTATTAGTGCGTCTATCGGTGAAAGAAGGCGTGAGCAGCGATGTACAGGTCAAATCTGT
CATGGCTGCGGCTCAACAAGTGGATGCGGGCGTTCAACAGAAACGTGTTGAATTCGTTGGTCCTCAAGTGGGTAAAGAAC
TGGCCGAACAGGGCGGTTTAGCGGTATTGGTCGCGCTTATCTGTATCATGATCTACGTGTCTTTCCGTTTCGAATGGCGT
TTAGCCTTCGGTTCGGTAGCAGCACTTGCCCACGACGTGATTGTGACCTTAGGTGTGTTCTCTGTGTTCCAACTGGAATT
CGACCTGACCGTATTAGCCGGCGTGTTAACCGTTGTGGGTTACTCACTCAACGATACCATCGTTGTGTTTGACCGTATCC
GTGAAAACTTCCTCAAGATGCGTAAGAGCGAGCCAGAAGAAGTGGTCAACGTCTCTATCACGCAAACCATGAGCCGTACC
ATTATCACTACGGGTACGACGCTGGTGACCGTTGTGGCGCTGTTCCTGAAGGGCGGCACTATGATCCACGGTTTTGCGAC
AGCACTCTTGTTGGGTATTTTCGTCGGTACCTATTCTTCTATCTACGTAGCAAGTTACCTTGCGATCAAACTGGGCATTT
GCCGTGAGCATATGATGCCAGTTGAAGTCGAGAAAGAAGGTGCTGACCAGCCTTCGATGATGCCTTAA

Upstream 100 bases:

>100_bases
GACATCGATGTTTACCGCTATCGTGGGTACTCGCTCAATCGTGAACGCGATTTGGGGCGGTAAGCGCGTGAAGACGCTGT
CTATCTAAGGGGAAGCGATA

Downstream 100 bases:

>100_bases
TCGGGCATTGAGACTCGAGGTCGTGTATCACGACTGTTGAAAAAAAAGCCACCTTGAAGGTGGCTTTTTTTTCGGTGGAT
TTTGACCTTTCCGATAATCT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MLEILSLKRTVNFLRHALPISIMSAILVFGSLVSLATKGINWGLDFTGGTVVEMEFTQPVDLNVLRTKLSAPELDGAVVQ
NFGSSRDVLVRLSVKEGVSSDVQVKSVMAAAQQVDAGVQQKRVEFVGPQVGKELAEQGGLAVLVALICIMIYVSFRFEWR
LAFGSVAALAHDVIVTLGVFSVFQLEFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSEPEEVVNVSITQTMSRT
IITTGTTLVTVVALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLGICREHMMPVEVEKEGADQPSMMP

Sequences:

>Translated_315_residues
MLEILSLKRTVNFLRHALPISIMSAILVFGSLVSLATKGINWGLDFTGGTVVEMEFTQPVDLNVLRTKLSAPELDGAVVQ
NFGSSRDVLVRLSVKEGVSSDVQVKSVMAAAQQVDAGVQQKRVEFVGPQVGKELAEQGGLAVLVALICIMIYVSFRFEWR
LAFGSVAALAHDVIVTLGVFSVFQLEFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSEPEEVVNVSITQTMSRT
IITTGTTLVTVVALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLGICREHMMPVEVEKEGADQPSMMP
>Mature_315_residues
MLEILSLKRTVNFLRHALPISIMSAILVFGSLVSLATKGINWGLDFTGGTVVEMEFTQPVDLNVLRTKLSAPELDGAVVQ
NFGSSRDVLVRLSVKEGVSSDVQVKSVMAAAQQVDAGVQQKRVEFVGPQVGKELAEQGGLAVLVALICIMIYVSFRFEWR
LAFGSVAALAHDVIVTLGVFSVFQLEFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSEPEEVVNVSITQTMSRT
IITTGTTLVTVVALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLGICREHMMPVEVEKEGADQPSMMP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=312, Percent_Identity=49.6794871794872, Blast_Score=325, Evalue=3e-90,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34182; Mature: 34182

Theoretical pI: Translated: 5.73; Mature: 5.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEILSLKRTVNFLRHALPISIMSAILVFGSLVSLATKGINWGLDFTGGTVVEMEFTQPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCC
DLNVLRTKLSAPELDGAVVQNFGSSRDVLVRLSVKEGVSSDVQVKSVMAAAQQVDAGVQQ
CHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHCCHHH
KRVEFVGPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVF
HHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHH
SVFQLEFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSEPEEVVNVSITQTMSRT
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IITTGTTLVTVVALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLGICREHMMP
HEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VEVEKEGADQPSMMP
CEECCCCCCCCCCCC
>Mature Secondary Structure
MLEILSLKRTVNFLRHALPISIMSAILVFGSLVSLATKGINWGLDFTGGTVVEMEFTQPV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCEEEEEECCCCC
DLNVLRTKLSAPELDGAVVQNFGSSRDVLVRLSVKEGVSSDVQVKSVMAAAQQVDAGVQQ
CHHHHHHHCCCCCCCCHHHHHCCCCCCEEEEEEHHCCCCCCHHHHHHHHHHHHHHCCHHH
KRVEFVGPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVF
HHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHH
SVFQLEFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSEPEEVVNVSITQTMSRT
HHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
IITTGTTLVTVVALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLGICREHMMP
HEECCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VEVEKEGADQPSMMP
CEECCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]