Click here to switch to the map view.

The map label for this gene is flgD [H]

Identifier: 113969605

GI number: 113969605

Start: 1467365

End: 1468135

Strand: Direct

Name: flgD [H]

Synonym: Shewmr4_1261

Alternate gene names: 113969605

Gene position: 1467365-1468135 (Clockwise)

Preceding gene: 113969604

Following gene: 113969606

Centisome position: 31.18

GC content: 47.73

Gene sequence:

>771_bases
GTGAGCCTCATTAATCAACTTAGCCAGACCTCGGCTCAGCCGACTCAAACTAAGACTCAATCGAATACGGTGGCAACCAA
TACCACGAGCACTTCAACGGGTAATCCCTTTTTAGATGGGATCCGTTTGCCTGGGAATTCCGTTGTTCCTGAAGCCAAGA
GTCAACAGCTGACACAAGAAGATTTTTTCTCGCTACTCAGTCAGCAATTGTCGATGCAGGATCCCTTTAAGCCTGTCGAC
AACGACCAAATGATTGCGCAAATGGCATCCTTTTCTACCGTGGATGGTATTTCTAAACTTAACGATGAAATTGTTAATTT
AAACAGTGTGATGACATCGAGTCAGGCACTGCAAGCATCGGGATTAGTTGGACGTAAGGTGTTGATCCCAACCGATACCG
GCAATGTGTCTGTCGAAAGCCCCACCCTGAGTGGCGTGGTGAGTACGCCGGATAAAATCCCTGTTATCAACGTGCGTGTG
TTGGATGATAAAGGCCAAGTGGTAAGCACCTTTAACATCGATGGCAGTGATGGCGGCAACATCCCTGTGACATGGGATGG
TCTGAATGAAAATGGTGAGCCTGTCAGTGCCGGTAATTACACCATTAAGGCCAGTGGTATTGTCGATGGAGAATCTCAAG
AGCTTGCTGTGTCGACCTATGCCCATGTGACAAGCGTTTCGTTAGGTACTGCAAGTACTGGGGCGATTCTCAATCTTCGC
GGTGGTGCAGGCATTAAGCTCTCTGATGTACTTGCTGTATCCGAAACCTAA

Upstream 100 bases:

>100_bases
CTCATATCAGATGAATGTTCAAGTCGCTGAAGCCGCAAAATCAATGCTGCAACAAACACTTGGGATGGGTAAATAAGATG
CGTTATTTAGGAGGTAAGCT

Downstream 100 bases:

>100_bases
TTTGTCAGTATTAAGTTGGACTTGGGTCCTTAATTGAATTGAGTGAAATGTAGAGGTGAATTATGTCGTTTAACATTGCA
TTGAGTGGCATTTCTGCTGC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 255

Protein sequence:

>256_residues
MSLINQLSQTSAQPTQTKTQSNTVATNTTSTSTGNPFLDGIRLPGNSVVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVD
NDQMIAQMASFSTVDGISKLNDEIVNLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRV
LDDKGQVVSTFNIDGSDGGNIPVTWDGLNENGEPVSAGNYTIKASGIVDGESQELAVSTYAHVTSVSLGTASTGAILNLR
GGAGIKLSDVLAVSET

Sequences:

>Translated_256_residues
MSLINQLSQTSAQPTQTKTQSNTVATNTTSTSTGNPFLDGIRLPGNSVVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVD
NDQMIAQMASFSTVDGISKLNDEIVNLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRV
LDDKGQVVSTFNIDGSDGGNIPVTWDGLNENGEPVSAGNYTIKASGIVDGESQELAVSTYAHVTSVSLGTASTGAILNLR
GGAGIKLSDVLAVSET
>Mature_255_residues
SLINQLSQTSAQPTQTKTQSNTVATNTTSTSTGNPFLDGIRLPGNSVVPEAKSQQLTQEDFFSLLSQQLSMQDPFKPVDN
DQMIAQMASFSTVDGISKLNDEIVNLNSVMTSSQALQASGLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVL
DDKGQVVSTFNIDGSDGGNIPVTWDGLNENGEPVSAGNYTIKASGIVDGESQELAVSTYAHVTSVSLGTASTGAILNLRG
GAGIKLSDVLAVSET

Specific function: Required for flagellar hook formation. May act as a scaffolding protein [H]

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family [H]

Homologues:

Organism=Escherichia coli, GI1787315, Length=156, Percent_Identity=33.3333333333333, Blast_Score=82, Evalue=3e-17,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005648 [H]

Pfam domain/function: PF03963 FlgD [H]

EC number: NA

Molecular weight: Translated: 26646; Mature: 26515

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLINQLSQTSAQPTQTKTQSNTVATNTTSTSTGNPFLDGIRLPGNSVVPEAKSQQLTQE
CHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCHH
DFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDEIVNLNSVMTSSQALQAS
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
GLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVLDDKGQVVSTFNIDGSDGGN
CCCCCEEEEECCCCCEEECCCCCCCEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCC
IPVTWDGLNENGEPVSAGNYTIKASGIVDGESQELAVSTYAHVTSVSLGTASTGAILNLR
CCEEECCCCCCCCEEECCCEEEEECCEECCCCCEEEEEEEHEEEEEECCCCCCCEEEEEC
GGAGIKLSDVLAVSET
CCCCCEEEEEEEECCC
>Mature Secondary Structure 
SLINQLSQTSAQPTQTKTQSNTVATNTTSTSTGNPFLDGIRLPGNSVVPEAKSQQLTQE
HHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCEECCCCCCCCCCHHHHCCHH
DFFSLLSQQLSMQDPFKPVDNDQMIAQMASFSTVDGISKLNDEIVNLNSVMTSSQALQAS
HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
GLVGRKVLIPTDTGNVSVESPTLSGVVSTPDKIPVINVRVLDDKGQVVSTFNIDGSDGGN
CCCCCEEEEECCCCCEEECCCCCCCEECCCCCCEEEEEEEECCCCCEEEEEECCCCCCCC
IPVTWDGLNENGEPVSAGNYTIKASGIVDGESQELAVSTYAHVTSVSLGTASTGAILNLR
CCEEECCCCCCCCEEECCCEEEEECCEECCCCCEEEEEEEHEEEEEECCCCCCCEEEEEC
GGAGIKLSDVLAVSET
CCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]