| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113969409
Identifier: 113969409
GI number: 113969409
Start: 1247180
End: 1248019
Strand: Direct
Name: 113969409
Synonym: Shewmr4_1065
Alternate gene names: NA
Gene position: 1247180-1248019 (Clockwise)
Preceding gene: 113969406
Following gene: 113969410
Centisome position: 26.5
GC content: 48.1
Gene sequence:
>840_bases ATGTCTACCGAACATCTACTGTTAGTCGGATTACTCAAAAAATTAAAAGATGATGCTTTAGTGCTACCGACTCTGCCCGA AGTAGCCATGCGGGTACAAGAAGTGGTGAGTCGCTCCGATGCGAGCCTAAAGCAAGTGGCTGAGGTGATCGGTCAAGATG CGGCGATTTCGGCGCGTATTATTAAAGTCGCCAACAGTGCTTTGTATAGCCGTGGCATTCCCGCCGAGAGCATTAATAGT GCGGTCTCCCGTATCGGTTTAATCCAAATTAAGAGTATTGCGACCTCAGTAGCTATGGAGCAGCTCTTTATTTCTACCAA TGAAATGGTATGGGAAGTGATGGATGAAGTGTGGCGCACCTCGATTGAAGTAACGGCCGCCGCCTGCGCCATGTTGCAAA TGTACAATAAGCGTCACCCCGGTCAGCTCAATCTCGATACCTTAACATTGGCAGGTCTAGTCCATAATATCGGTGCATTA CCAGTACTGACCGAAGCCGAAGCCCATCCAGAGTTATTCACTAGCATTGATCAATTGCGCTCTTTAGTACGTAAAATGCA AGGTCCACTGGGACGTGCGGTGTTAAAGAGTTGGGCTTTTGCGCCAGAGGTGATGGAAGTGGTTGAGCGTTGGGCGGATT TACCTTATCTGCCGGACCATGTGACCTACTTAGATTTTATCCGTGCCGCAGCCTTTTACACCGGTGAGTTACGTGCCGGT GCCGATTTTGAGCAACGGATGGAAGTCTTTGTGAGTCGTGGTTTACCCGTTTCGGCGAGTGATTTAGCGAGTGATGAATT TATGGATAAATTCCATTCAATCAGAGAGAGTTACCAGTAG
Upstream 100 bases:
>100_bases AATAATTAACGTCTGTTGCTTTTTTCTGCCCATCAATCGGTGGGCAACTGATATACTCCAACTATTGAAGATTTATGTTT GCAGATTGATGGGAGCGAAG
Downstream 100 bases:
>100_bases TCGTAGGGCCTAGAGGGAAGCCAATCTTACTCCGTGCTGGGGAGAATGGTGTATTAAGCTTACGTGGTAAGATTGAGGCC AAACTATGGTTATTCTGGGA
Product: putative signal transduction protein
Products: NA
Alternate protein names: Metal Dependent Phosphohydrolase; Histidine Kinase; Metal-Dependent Phosphoesterase; Cytoplasmic Protein; Metal-Dependent Phosphohydrolase; HD Domain-Containing Protein; HD Family Protein; Diguanylate Cyclase; Fusion Protein Comosed Of NSignal Transduction Protein; Metal-Dependent Hydrolase HDOD; Hdod Domain Family Protein
Number of amino acids: Translated: 279; Mature: 278
Protein sequence:
>279_residues MSTEHLLLVGLLKKLKDDALVLPTLPEVAMRVQEVVSRSDASLKQVAEVIGQDAAISARIIKVANSALYSRGIPAESINS AVSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIEVTAAACAMLQMYNKRHPGQLNLDTLTLAGLVHNIGAL PVLTEAEAHPELFTSIDQLRSLVRKMQGPLGRAVLKSWAFAPEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAG ADFEQRMEVFVSRGLPVSASDLASDEFMDKFHSIRESYQ
Sequences:
>Translated_279_residues MSTEHLLLVGLLKKLKDDALVLPTLPEVAMRVQEVVSRSDASLKQVAEVIGQDAAISARIIKVANSALYSRGIPAESINS AVSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIEVTAAACAMLQMYNKRHPGQLNLDTLTLAGLVHNIGAL PVLTEAEAHPELFTSIDQLRSLVRKMQGPLGRAVLKSWAFAPEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAG ADFEQRMEVFVSRGLPVSASDLASDEFMDKFHSIRESYQ >Mature_278_residues STEHLLLVGLLKKLKDDALVLPTLPEVAMRVQEVVSRSDASLKQVAEVIGQDAAISARIIKVANSALYSRGIPAESINSA VSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRTSIEVTAAACAMLQMYNKRHPGQLNLDTLTLAGLVHNIGALP VLTEAEAHPELFTSIDQLRSLVRKMQGPLGRAVLKSWAFAPEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAGA DFEQRMEVFVSRGLPVSASDLASDEFMDKFHSIRESYQ
Specific function: Unknown
COG id: COG1639
COG function: function code T; Predicted signal transduction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30886; Mature: 30755
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTEHLLLVGLLKKLKDDALVLPTLPEVAMRVQEVVSRSDASLKQVAEVIGQDAAISARI CCCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH IKVANSALYSRGIPAESINSAVSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRT HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIEVTAAACAMLQMYNKRHPGQLNLDTLTLAGLVHNIGALPVLTEAEAHPELFTSIDQLR HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHH SLVRKMQGPLGRAVLKSWAFAPEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAG HHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC ADFEQRMEVFVSRGLPVSASDLASDEFMDKFHSIRESYQ CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure STEHLLLVGLLKKLKDDALVLPTLPEVAMRVQEVVSRSDASLKQVAEVIGQDAAISARI CCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHH IKVANSALYSRGIPAESINSAVSRIGLIQIKSIATSVAMEQLFISTNEMVWEVMDEVWRT HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH SIEVTAAACAMLQMYNKRHPGQLNLDTLTLAGLVHNIGALPVLTEAEAHPELFTSIDQLR HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCEECCCCCCHHHHHHHHHHH SLVRKMQGPLGRAVLKSWAFAPEVMEVVERWADLPYLPDHVTYLDFIRAAAFYTGELRAG HHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCC ADFEQRMEVFVSRGLPVSASDLASDEFMDKFHSIRESYQ CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA