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The map label for this gene is secD [H]

Identifier: 113969359

GI number: 113969359

Start: 1182612

End: 1184486

Strand: Direct

Name: secD [H]

Synonym: Shewmr4_1015

Alternate gene names: 113969359

Gene position: 1182612-1184486 (Clockwise)

Preceding gene: 113969358

Following gene: 113969360

Centisome position: 25.13

GC content: 50.56

Gene sequence:

>1875_bases
ATGGATAAAATTCAGAGTAAAAAGCTGTTAAATCACTATTCAGCTTGGAAATACGTTGTGCTTATTGTCACGATTATCGT
GATGTTATTTAGTGCCTTACCGACTTGGTATGGAGAAGATGCCGCCGTGCAGGTGGGCGCTAAAGCGGGGCTTAATTTAA
CCCCCATCGAACTGCGGGATAAATTAAAGGCGCAGGGCGTTGATGTTAAGCGTATCGAGGTTAAGCATGCCCAACATGGC
AACGCCAACAGCTCAGAAGACGGGCAAACCCTTATTGTACTCAATGATGACAGCGAGCAAACCTTAGTGAAGACCTTAGT
GTCATCCATGGTGAGTGAGCCGAAAGAGCTCACGCTCGCACTGGTGAGTGCAGCGCCAAGTTGGTTGCAAAATATGGGCT
TTGAACCGATTAAACTCGGGCTCGACTTACGCGGAGGAGTGCAATTTTTGCTGGATGTTGATGTGCAGCCCGTCTATCAA
GCCCAGGCCGATGCATTAGTCGAGTCCCTTAGGCAGTTTTTGCGTGAACAGCAAATTCGCGGCGCCAGTGTGCGTATTGA
TAGCACGCGCGATGACGCAGGGTTGCAAATTGCAATTGCATTTAATGACGCGGCTGAATCCACCAATAATGCGCGCTCAG
CTATTCGCCAATTTATGCAACAAAGCTACCCGACTTGGCAATTAACCAATGCGGATAATGGCTTAGTCGTACAGCTCGCT
CAAGAAGAGCAAATCAAGTTACGTAATTTAACCGTGCAGCAAAACCTGCAAATTATGCGTAGCCGGATTGAAGAGCTGGG
CATCACTGAGGCTTTAGTACAACGTCAGGGCGAACACCGTATCCGCATCGAGCTGCCCGGTGTACAAGACCCCGCTGCCG
CGAAAAACGTGATTGGTGCGACCGCTAGTCTGGCCTTTTTTGAAGTCAAAGAATCGGGTTCAGTGAATGCGCAGGTACTG
AAGGATAAATCAGGCAATCCTGTTTATGTGGCACGCACGCCGATATTGGGCGGCGATCATATTGTCGATGCCCGCGCCAA
TATTGGCGAAATGGGCATGGCCGAAGTGAACATTCACCTCGACCGTATCGGCGGCCAAAAAATGTCGGAGTTTTCCCGCG
CCAATATCGATAAGCCTATGGCAACATCCTACAGCGAATATAGCCGGGATGAGCAGGGCAAAGCTAAGCAAACCCAAGAG
ATCATCAGTGTCGCGACCATTCAATCGCAGCTGGGAGATCGTTTCAGGATCACTGGCGCAGGCACCTATCAAGAGGCGCA
GCAATTAGCCTTGTTGCTACGCGCTGGCTCAATGACGGCGCCTGTAACTATTGTTGAAGAACGTACCATTGGCCCAACCC
TTGGCGCCGAAAACATTCAAAACGGCTTTGCAGCGCTCGGCCTTGGTATGGGAATTACCTTGCTGTTTATGGCGCTCTGG
TATCGCCGTCTCGGTTGGGTGGCCAACGTGGCCTTGATTGCCAACATGGTGATCCTCTTTGGTTTGCTGGCACTGATCCC
CGGCGCAGTATTGACCTTACCCGGCATTGCCGGTCTGGTGCTGACGGTTGGTATGGCGGTCGATACCAACGTACTGATCT
TCGAGCGGATTAAAGACAAGTTGAAAGAGGGGCGCAGCTTTGCCCTGGCGATTGACACTGGCTTTGACAGTGCGTTCTCA
ACCATTTTCGACGCTAACTTCACCACTATGATCACTGCGGTTGTGCTCTATTCCATTGGTAATGGCCCCATCCAAGGTTT
TGCCTTGACCTTAGGTTTAGGTCTGTTGACCAGTATGTTTACCGGTATTTTTGCCTCAAGAGCCTTAATCAACCTAGTGT
ATGGGCGTGATGCGCGCCGCCATGTGAGGGTATAA

Upstream 100 bases:

>100_bases
CAGGTTTTACCGTAATACAGTGATTGTTCGCTCATGTTTAGCTGCACTATTTGCGCTACAGATGGCTATTCGAGCGGGCA
ATATCATGCGAGTGATATCT

Downstream 100 bases:

>100_bases
CTATGAAGAATCTCAATCTAACTAAATGGCGTTATGTGTCGAGCGCTATCTCTCTCTTTTTAATGTTGGCCTCTCTCACC
ATCATCGGGATGAAAGGCTT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 624; Mature: 624

Protein sequence:

>624_residues
MDKIQSKKLLNHYSAWKYVVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNLTPIELRDKLKAQGVDVKRIEVKHAQHG
NANSSEDGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQ
AQADALVESLRQFLREQQIRGASVRIDSTRDDAGLQIAIAFNDAAESTNNARSAIRQFMQQSYPTWQLTNADNGLVVQLA
QEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAQVL
KDKSGNPVYVARTPILGGDHIVDARANIGEMGMAEVNIHLDRIGGQKMSEFSRANIDKPMATSYSEYSRDEQGKAKQTQE
IISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW
YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVRV

Sequences:

>Translated_624_residues
MDKIQSKKLLNHYSAWKYVVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNLTPIELRDKLKAQGVDVKRIEVKHAQHG
NANSSEDGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQ
AQADALVESLRQFLREQQIRGASVRIDSTRDDAGLQIAIAFNDAAESTNNARSAIRQFMQQSYPTWQLTNADNGLVVQLA
QEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAQVL
KDKSGNPVYVARTPILGGDHIVDARANIGEMGMAEVNIHLDRIGGQKMSEFSRANIDKPMATSYSEYSRDEQGKAKQTQE
IISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW
YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVRV
>Mature_624_residues
MDKIQSKKLLNHYSAWKYVVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNLTPIELRDKLKAQGVDVKRIEVKHAQHG
NANSSEDGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQ
AQADALVESLRQFLREQQIRGASVRIDSTRDDAGLQIAIAFNDAAESTNNARSAIRQFMQQSYPTWQLTNADNGLVVQLA
QEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKESGSVNAQVL
KDKSGNPVYVARTPILGGDHIVDARANIGEMGMAEVNIHLDRIGGQKMSEFSRANIDKPMATSYSEYSRDEQGKAKQTQE
IISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW
YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFS
TIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVRV

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=627, Percent_Identity=42.1052631578947, Blast_Score=475, Evalue=1e-135,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67936; Mature: 67936

Theoretical pI: Translated: 6.43; Mature: 6.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKIQSKKLLNHYSAWKYVVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNLTPIELRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHH
KLKAQGVDVKRIEVKHAQHGNANSSEDGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLA
HHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHH
LVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQADALVESLRQFLREQQIR
HHHHCHHHHHHCCCCEEEECEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
GASVRIDSTRDDAGLQIAIAFNDAAESTNNARSAIRQFMQQSYPTWQLTNADNGLVVQLA
CCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEC
QEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGA
CCCCHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCC
TASLAFFEVKESGSVNAQVLKDKSGNPVYVARTPILGGDHIVDARANIGEMGMAEVNIHL
HHHEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEEE
DRIGGQKMSEFSRANIDKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA
ECCCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHH
LKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF
HHCCCEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TGIFASRALINLVYGRDARRHVRV
HHHHHHHHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MDKIQSKKLLNHYSAWKYVVLIVTIIVMLFSALPTWYGEDAAVQVGAKAGLNLTPIELRD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHH
KLKAQGVDVKRIEVKHAQHGNANSSEDGQTLIVLNDDSEQTLVKTLVSSMVSEPKELTLA
HHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHCCCHHHHHH
LVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQADALVESLRQFLREQQIR
HHHHCHHHHHHCCCCEEEECEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
GASVRIDSTRDDAGLQIAIAFNDAAESTNNARSAIRQFMQQSYPTWQLTNADNGLVVQLA
CCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEC
QEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGA
CCCCHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHCC
TASLAFFEVKESGSVNAQVLKDKSGNPVYVARTPILGGDHIVDARANIGEMGMAEVNIHL
HHHEEEEEECCCCCCCEEEEECCCCCEEEEEECCCCCCCCEEECCCCCCCCCEEEEEEEE
DRIGGQKMSEFSRANIDKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGA
ECCCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECC
GTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALW
CCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
YRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDK
HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHCCCCHHHHHHHHHH
LKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF
HHCCCEEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
TGIFASRALINLVYGRDARRHVRV
HHHHHHHHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]