Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 113969360

GI number: 113969360

Start: 1184489

End: 1185373

Strand: Direct

Name: secF [H]

Synonym: Shewmr4_1016

Alternate gene names: 113969360

Gene position: 1184489-1185373 (Clockwise)

Preceding gene: 113969359

Following gene: 113969362

Centisome position: 25.17

GC content: 49.38

Gene sequence:

>885_bases
ATGAAGAATCTCAATCTAACTAAATGGCGTTATGTGTCGAGCGCTATCTCTCTCTTTTTAATGTTGGCCTCTCTCACCAT
CATCGGGATGAAAGGCTTTAACTGGGGCTTGGATTTTACAGGTGGTGTGGTGACCGAGGTGCAGCTCGACAGAAGGATCA
CCAGTAGCGAGCTGCAACCGCTATTGAACGCGGCTTATCAGCAAGAGGTGACAGTGATTTCGGCCAGTGAGCCCGGACGC
TGGGTATTGCGCTATGCCGATACGGCGCAAAGTAATGTCAATATTCAAGAAACCTTAGCGCCACTGGGTGAGGTGCAAGT
ACTGAACACCAGTATTGTCGGCCCGCAAGTGGGTAAAGAGTTAGCCGAGCAGGGCGGTCTTGCTTTGTTGGTGGCCATGC
TGTGTATCTTAGGCTATTTGAGTTATCGCTTCGAATGGCGTCTCGCCTCCGGTGCGTTGTTTGCACTGGTGCACGACGTG
ATTTTCGTGCTCGCCTTTTTCTCATTAACCCAAATGGAGTTTAATTTAACCGTGCTCGCCGCCGTGCTGGCGATTTTAGG
CTATTCGCTCAATGATTCGATCATTATTGCCGACCGGATCCGGGAGTTATTGATAGCCAAACCAAAGCTTGCTATTCAAG
AGATTAACAACCAAGCGATTGTCGCGACATTTTCCCGTACCATGGTAACCTCGGGCACCACCTTAATGACGGTGGGTGCG
TTATGGATTATGGGCGGTGGGCCGCTGGAAGGATTCTCGATAGCCATGTTTATCGGCATCTTAACTGGCACTTTCTCATC
GATATCGGTCGGGACTTCATTGCCCGAATTTTTGGGATTAACGCCAGAGCATTATAAAGTGCAAGTCATCACAGATACGC
CATAA

Upstream 100 bases:

>100_bases
TAGGTCTGTTGACCAGTATGTTTACCGGTATTTTTGCCTCAAGAGCCTTAATCAACCTAGTGTATGGGCGTGATGCGCGC
CGCCATGTGAGGGTATAACT

Downstream 100 bases:

>100_bases
GTGCTAAAAACAAAACGGCCACTCGCTTGAGTGGCCGTTTTGTTTAAGGCTGGAAAATTACTTAGCTCTTGGCAGGGCAA
TTTTCATTTCAGGCGATTGA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 294

Protein sequence:

>294_residues
MKNLNLTKWRYVSSAISLFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQPLLNAAYQQEVTVISASEPGR
WVLRYADTAQSNVNIQETLAPLGEVQVLNTSIVGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDV
IFVLAFFSLTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGA
LWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLTPEHYKVQVITDTP

Sequences:

>Translated_294_residues
MKNLNLTKWRYVSSAISLFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQPLLNAAYQQEVTVISASEPGR
WVLRYADTAQSNVNIQETLAPLGEVQVLNTSIVGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDV
IFVLAFFSLTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGA
LWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLTPEHYKVQVITDTP
>Mature_294_residues
MKNLNLTKWRYVSSAISLFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQPLLNAAYQQEVTVISASEPGR
WVLRYADTAQSNVNIQETLAPLGEVQVLNTSIVGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDV
IFVLAFFSLTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGA
LWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLTPEHYKVQVITDTP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=292, Percent_Identity=39.7260273972603, Blast_Score=205, Evalue=4e-54,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 31942; Mature: 31942

Theoretical pI: Translated: 4.85; Mature: 4.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNLNLTKWRYVSSAISLFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCCHHHHHH
LLNAAYQQEVTVISASEPGRWVLRYADTAQSNVNIQETLAPLGEVQVLNTSIVGPQVGKE
HHHHHHHCCEEEEECCCCCCEEEEEECCCCCCCCHHHHHCCCCCEEEEEEECCCHHHHHH
LAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFSLTQMEFNLTVLA
HHHHCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGA
HHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHCCCCEEEEEEHHHHHCCCCHHHHHHH
LWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLTPEHYKVQVITDTP
HHEECCCCCCHHHHHHHHHHHHCCCCHHCCCCCCHHHHCCCCCCEEEEEEECCC
>Mature Secondary Structure
MKNLNLTKWRYVSSAISLFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQP
CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEHHHCCCHHHHHH
LLNAAYQQEVTVISASEPGRWVLRYADTAQSNVNIQETLAPLGEVQVLNTSIVGPQVGKE
HHHHHHHCCEEEEECCCCCCEEEEEECCCCCCCCHHHHHCCCCCEEEEEEECCCHHHHHH
LAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFSLTQMEFNLTVLA
HHHHCCHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVLAILGYSLNDSIIIADRIRELLIAKPKLAIQEINNQAIVATFSRTMVTSGTTLMTVGA
HHHHHHCCCCCCCEEEHHHHHHHHHCCCCHHHHHCCCCEEEEEEHHHHHCCCCHHHHHHH
LWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLGLTPEHYKVQVITDTP
HHEECCCCCCHHHHHHHHHHHHCCCCHHCCCCCCHHHHCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]