| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is 113968984
Identifier: 113968984
GI number: 113968984
Start: 745025
End: 746245
Strand: Direct
Name: 113968984
Synonym: Shewmr4_0640
Alternate gene names: NA
Gene position: 745025-746245 (Clockwise)
Preceding gene: 113968983
Following gene: 113968985
Centisome position: 15.83
GC content: 52.17
Gene sequence:
>1221_bases ATGAGCAGTAATTTACATCAGGCTGGGGTGAAGCTACTCAAGCAGTTAGGTCGCCATGCTGACATCATTATGGACGCCTA TTTAGCGGGTTCCTTAAACGAGGATGCCCATGATCCCGCCGTAGTTGAAAAACTCAAGCAGGCGGGGATTTTATGGCGCC CAGAGCCTGACCAAGAGCTGCGCCTTAAACGCTCGGTGCGTGCCTTACTCGAAGAGGGCTTAAGTGATGAACGCAATCGC CAAATCGACTCCAACGTCGGCTCGGCGCTCGCCACCATTAAGACCTTGGCCGACCACTATAAAGAAGCGCGCCACAGCTC AGATTACAGTGCCGCCGAGGCGTATCTGTCTGATTTAAGTGAGCATGTGTATAGCTTTGCCGACAGTTTACGTTACTCCA TCCGCGTGTTGTGGGGGCGCATCAACAACGAGTTCGGTTATGTCGGTACCATTAACGCTAAGATCCGTGAAAACGAACTC GCTCAAAGCCAAGTATCTGAATTACTTAATGGTTTGGAGATGTTCCAGTTTAGCGAATTAGGTGAAATCGCCGGTGATAT CCGTGAGCTGCGTAAGCTGCTGGTGACGACTTTGCAGGAAACCATGAGCGACTGCGCCCAGGAACTCAGTGTGGTGCAGG GCAGGTTGCTGGAACTCCTCGGCCGCTTTAGGCAAATTCGCGGCCGTACCCGCTTGCTTAAGGGCTGGTTACTGTACACC GATTTGCATCCGGATTATCGCCCTGCGGACCATGTGTCCCACAAGGAAATCCCGAGTTTTTTCAATCGCGCCGAAGTGCT GTTGGCTCCAGCATCTGTGGATGTGCATAACGCCAGCCAAGAGTTTGAGTTGATGAACATTGTCGCCCATATCAAGGCGA TTAGCCGTCAGGGCATAGTCGAAACGGTGCGCGAGCAGGATGTGGCCGTGCCGCTGACGCAGAATGAAGACTTTGATATT CCTGATAATCCACTCAAGCAAGCGGTCGACACTTACTTTGTCGATGTGATTGAGTCGGGCTTACGCCAGTCGGCGCTCGA TTACTTAGCCGAAAAAGCGCTGCCGTGGGATGCCGAAAGCTGGATTTATCAAGTGATTGGCGGCTACGAAGGCTTACCCG ATGAGCATAAGGCTTACTTCGAGTTAGAACCCTTAGGTGAACCGCACCCCATCTACAGCGGTAACTTTATTATCCGCGAC GTGGAATTATGGCTCGCCTAG
Upstream 100 bases:
>100_bases CGAAGGCCTAAGCCTAGAAGCGCAGGCGGAAACGGCGACGCAGCGGGATTTACTATGATGCCTTGGACGATAACGCACAG CATCAACCAAGGAGGCCGTG
Downstream 100 bases:
>100_bases GTAAGCAGCAGTTGCAACTCTTGGAGGGCGTTTACCTTAATCGCTCTCCAAGGGTGAAACTCAGCCCGAATTGGCGGACG ATTTACCGCGAGTTAGAAGT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 406; Mature: 405
Protein sequence:
>406_residues MSSNLHQAGVKLLKQLGRHADIIMDAYLAGSLNEDAHDPAVVEKLKQAGILWRPEPDQELRLKRSVRALLEEGLSDERNR QIDSNVGSALATIKTLADHYKEARHSSDYSAAEAYLSDLSEHVYSFADSLRYSIRVLWGRINNEFGYVGTINAKIRENEL AQSQVSELLNGLEMFQFSELGEIAGDIRELRKLLVTTLQETMSDCAQELSVVQGRLLELLGRFRQIRGRTRLLKGWLLYT DLHPDYRPADHVSHKEIPSFFNRAEVLLAPASVDVHNASQEFELMNIVAHIKAISRQGIVETVREQDVAVPLTQNEDFDI PDNPLKQAVDTYFVDVIESGLRQSALDYLAEKALPWDAESWIYQVIGGYEGLPDEHKAYFELEPLGEPHPIYSGNFIIRD VELWLA
Sequences:
>Translated_406_residues MSSNLHQAGVKLLKQLGRHADIIMDAYLAGSLNEDAHDPAVVEKLKQAGILWRPEPDQELRLKRSVRALLEEGLSDERNR QIDSNVGSALATIKTLADHYKEARHSSDYSAAEAYLSDLSEHVYSFADSLRYSIRVLWGRINNEFGYVGTINAKIRENEL AQSQVSELLNGLEMFQFSELGEIAGDIRELRKLLVTTLQETMSDCAQELSVVQGRLLELLGRFRQIRGRTRLLKGWLLYT DLHPDYRPADHVSHKEIPSFFNRAEVLLAPASVDVHNASQEFELMNIVAHIKAISRQGIVETVREQDVAVPLTQNEDFDI PDNPLKQAVDTYFVDVIESGLRQSALDYLAEKALPWDAESWIYQVIGGYEGLPDEHKAYFELEPLGEPHPIYSGNFIIRD VELWLA >Mature_405_residues SSNLHQAGVKLLKQLGRHADIIMDAYLAGSLNEDAHDPAVVEKLKQAGILWRPEPDQELRLKRSVRALLEEGLSDERNRQ IDSNVGSALATIKTLADHYKEARHSSDYSAAEAYLSDLSEHVYSFADSLRYSIRVLWGRINNEFGYVGTINAKIRENELA QSQVSELLNGLEMFQFSELGEIAGDIRELRKLLVTTLQETMSDCAQELSVVQGRLLELLGRFRQIRGRTRLLKGWLLYTD LHPDYRPADHVSHKEIPSFFNRAEVLLAPASVDVHNASQEFELMNIVAHIKAISRQGIVETVREQDVAVPLTQNEDFDIP DNPLKQAVDTYFVDVIESGLRQSALDYLAEKALPWDAESWIYQVIGGYEGLPDEHKAYFELEPLGEPHPIYSGNFIIRDV ELWLA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45977; Mature: 45846
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSNLHQAGVKLLKQLGRHADIIMDAYLAGSLNEDAHDPAVVEKLKQAGILWRPEPDQEL CCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHH RLKRSVRALLEEGLSDERNRQIDSNVGSALATIKTLADHYKEARHSSDYSAAEAYLSDLS HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EHVYSFADSLRYSIRVLWGRINNEFGYVGTINAKIRENELAQSQVSELLNGLEMFQFSEL HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH GEIAGDIRELRKLLVTTLQETMSDCAQELSVVQGRLLELLGRFRQIRGRTRLLKGWLLYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE DLHPDYRPADHVSHKEIPSFFNRAEVLLAPASVDVHNASQEFELMNIVAHIKAISRQGIV ECCCCCCCCCCCCHHHHHHHHCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ETVREQDVAVPLTQNEDFDIPDNPLKQAVDTYFVDVIESGLRQSALDYLAEKALPWDAES HHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH WIYQVIGGYEGLPDEHKAYFELEPLGEPHPIYSGNFIIRDVELWLA HHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHCC >Mature Secondary Structure SSNLHQAGVKLLKQLGRHADIIMDAYLAGSLNEDAHDPAVVEKLKQAGILWRPEPDQEL CCCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHH RLKRSVRALLEEGLSDERNRQIDSNVGSALATIKTLADHYKEARHSSDYSAAEAYLSDLS HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH EHVYSFADSLRYSIRVLWGRINNEFGYVGTINAKIRENELAQSQVSELLNGLEMFQFSEL HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH GEIAGDIRELRKLLVTTLQETMSDCAQELSVVQGRLLELLGRFRQIRGRTRLLKGWLLYT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE DLHPDYRPADHVSHKEIPSFFNRAEVLLAPASVDVHNASQEFELMNIVAHIKAISRQGIV ECCCCCCCCCCCCHHHHHHHHCCHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH ETVREQDVAVPLTQNEDFDIPDNPLKQAVDTYFVDVIESGLRQSALDYLAEKALPWDAES HHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH WIYQVIGGYEGLPDEHKAYFELEPLGEPHPIYSGNFIIRDVELWLA HHHHHHHCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA