| Definition | Shewanella sp. MR-4 chromosome, complete genome. |
|---|---|
| Accession | NC_008321 |
| Length | 4,706,287 |
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The map label for this gene is mutL [H]
Identifier: 113968940
GI number: 113968940
Start: 688666
End: 690600
Strand: Direct
Name: mutL [H]
Synonym: Shewmr4_0596
Alternate gene names: 113968940
Gene position: 688666-690600 (Clockwise)
Preceding gene: 113968939
Following gene: 113968941
Centisome position: 14.63
GC content: 51.73
Gene sequence:
>1935_bases ATGGGGATCCAGATCCTTCCGCCGCAACTAGCCAACCAAATCGCCGCCGGTGAGGTGGTCGAACGGCCTGCTTCCGTGGT GAAGGAACTTGTCGAGAACAGCCTAGATGCTGGGGCGACGCGTATCGATATCGAAATCGATAAGGGCGGCAGCAAGCTGA TTAAGATCCGTGACAATGGTTCGGGGATCCCAAAGGATGAGCTGGCTTTGGCCTTGTCGCGCCATGCCACCTCGAAACTG CACTCCCTTGACGACCTTGAAGCCATCCTCAGCTTTGGTTTTCGCGGCGAGGCATTGGCGAGTATCAGCTCTGTGTCCCG CTTAACCTTGACCTCGCGTACGGCCGAGCAAACGGAAGCCTGGCAGGCTTATGCCGAAGGCGTCGACATGGCGGTTAAGG TCATGCCGGCCGCGCATCCTGTTGGTTCAACTATCGAAGTTGTCGATCTGTTCTTTAATACGCCCGCCCGTAGACGTTTT CTTAAAAGCGATAAAACCGAATTTACTCATATCGATGAATGGTTAAAACGCATTGCGTTAGTGCGTGGGGATATCCACTT TACCTTGACCCACAATGGCAAAACCGTACGTAACTATCGTCCGGCGATGAATGAGCCGCAGTATTTGCAGCGATTGACTC AGGTTGCTGGACGCCAATTTGCCGATGAGGCGTTGCGGGTCGAATGCCAACACGATGACCTACGTTTAAGTGGTTATTTG CAGTCGCCTTGGTCAACGGTGTTAACCGACACCCATTATTTTTATGTGAATGGCCGCTTAGTGCGCGACCGTTTAGTCAA TCATGCGGTGCGCCAAGCATTTGCCCAGAAAGCCGAGGTCGAACAGCCGGGTTATGTGTTGATGCTGGATATCGATCCTC ATCAGGTGGATGTGAACGTGCATCCGGCGAAACACGAAGTGCGCTTTCATCAGAGCCGTTATGTGCATGATTATATTCTG CAGGCACTGCAATCGGCGCTCGAAGAAGCGGGTGAGCTGGGTTTTGAGCATCCTTTCGAGCCAAGTTCGCCACAGGTTAG GGATGAGGTCTCTCTCTCCGAATCTGGGACGCAGACACAAACAGAGCATCATGCCTTCGAGCTGCAATCGCCTGAATCTA AAACGCATTCAACTTGGAATGAAGCTTCACGTGTTGATACTTCTCGCGTCGAGATATCACGGGATTCTCAGCTTACTGAG CGTACTCGGGACATTGCTAGCGCGCGTCCGTATTCTGGCGTGCAAAGCAATGCCTACGGCAGTATGGCGGTTCCGCGGGA GTCACGCAGTGGTCCGACAGGGGAAAGTCGTGCCCGAGCCGAGCTTCCTTCTAAGGCGGCAATCGCCAGTTACGGCGAAT TATTGCAAACGCCATCCTATAGCGTGCAGGACAAGCCGTATCAACCCGTGCTTGCAATGCCCGCCATGCTCAATGGTCAA TATTGGGTATTAGCGCAAGGGCAAAACCTGAGTCTGTTGCCGATTCAATCTGTGGCGTTAGCGACTCGTAGCCATGAGAT AGAAACAAAGCTGGCAACCGGCTTGATAGGTCAGCCATTATTGATGCCAGTGTCGATTGCCGCCGATACGGATTGGCCAG CATTACTCGAAGAACATGAAACACTTATCCGGCAATTAGGATTAGAACTAACAATTCGCTATCAGCAGTTGATAATCAAA AAAGTGCCCCCATATCTCAGGGATAGCCAGTTAGCGAAGGTGATCCCCGAGTGGTTGCAATCGCTACGTTTTGAAGCGCC AGCACCTAATGCATTGGCTGTGTGGCTGGCAGAGCAGAGTTTAACTGGATTTACCTCGGCTGCGGATATTTGGGCGGCCT ATAGTCAGTTAACTGAAGAGAAAAGACAGCAAATTGCCGATAAAGCAGTATCCTTACCTTGGCAATCGTGGCTAGAAGAG CAAGCAATTGAATAA
Upstream 100 bases:
>100_bases GTGCCTATGGCCAGCATTAAGCGCGCCAATGGCATGAAGACGGATGTGGTGCAACTCGGACAAACACTCGTCATTCCTGA GAGTTAATAGGATGAAGTCT
Downstream 100 bases:
>100_bases AGAATTACAGCCAAAAGTGGTTTTTTTGATGGGACCAACGGCGTCCGGAAAAACCGCTTTAGCACTCGAATTAGCCGAAA AGCATAATTGCGAGATTATC
Product: DNA mismatch repair protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 644; Mature: 643
Protein sequence:
>644_residues MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNGSGIPKDELALALSRHATSKL HSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEAWQAYAEGVDMAVKVMPAAHPVGSTIEVVDLFFNTPARRRF LKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVRNYRPAMNEPQYLQRLTQVAGRQFADEALRVECQHDDLRLSGYL QSPWSTVLTDTHYFYVNGRLVRDRLVNHAVRQAFAQKAEVEQPGYVLMLDIDPHQVDVNVHPAKHEVRFHQSRYVHDYIL QALQSALEEAGELGFEHPFEPSSPQVRDEVSLSESGTQTQTEHHAFELQSPESKTHSTWNEASRVDTSRVEISRDSQLTE RTRDIASARPYSGVQSNAYGSMAVPRESRSGPTGESRARAELPSKAAIASYGELLQTPSYSVQDKPYQPVLAMPAMLNGQ YWVLAQGQNLSLLPIQSVALATRSHEIETKLATGLIGQPLLMPVSIAADTDWPALLEEHETLIRQLGLELTIRYQQLIIK KVPPYLRDSQLAKVIPEWLQSLRFEAPAPNALAVWLAEQSLTGFTSAADIWAAYSQLTEEKRQQIADKAVSLPWQSWLEE QAIE
Sequences:
>Translated_644_residues MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNGSGIPKDELALALSRHATSKL HSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEAWQAYAEGVDMAVKVMPAAHPVGSTIEVVDLFFNTPARRRF LKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVRNYRPAMNEPQYLQRLTQVAGRQFADEALRVECQHDDLRLSGYL QSPWSTVLTDTHYFYVNGRLVRDRLVNHAVRQAFAQKAEVEQPGYVLMLDIDPHQVDVNVHPAKHEVRFHQSRYVHDYIL QALQSALEEAGELGFEHPFEPSSPQVRDEVSLSESGTQTQTEHHAFELQSPESKTHSTWNEASRVDTSRVEISRDSQLTE RTRDIASARPYSGVQSNAYGSMAVPRESRSGPTGESRARAELPSKAAIASYGELLQTPSYSVQDKPYQPVLAMPAMLNGQ YWVLAQGQNLSLLPIQSVALATRSHEIETKLATGLIGQPLLMPVSIAADTDWPALLEEHETLIRQLGLELTIRYQQLIIK KVPPYLRDSQLAKVIPEWLQSLRFEAPAPNALAVWLAEQSLTGFTSAADIWAAYSQLTEEKRQQIADKAVSLPWQSWLEE QAIE >Mature_643_residues GIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNGSGIPKDELALALSRHATSKLH SLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEAWQAYAEGVDMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFL KSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVRNYRPAMNEPQYLQRLTQVAGRQFADEALRVECQHDDLRLSGYLQ SPWSTVLTDTHYFYVNGRLVRDRLVNHAVRQAFAQKAEVEQPGYVLMLDIDPHQVDVNVHPAKHEVRFHQSRYVHDYILQ ALQSALEEAGELGFEHPFEPSSPQVRDEVSLSESGTQTQTEHHAFELQSPESKTHSTWNEASRVDTSRVEISRDSQLTER TRDIASARPYSGVQSNAYGSMAVPRESRSGPTGESRARAELPSKAAIASYGELLQTPSYSVQDKPYQPVLAMPAMLNGQY WVLAQGQNLSLLPIQSVALATRSHEIETKLATGLIGQPLLMPVSIAADTDWPALLEEHETLIRQLGLELTIRYQQLIIKK VPPYLRDSQLAKVIPEWLQSLRFEAPAPNALAVWLAEQSLTGFTSAADIWAAYSQLTEEKRQQIADKAVSLPWQSWLEEQ AIE
Specific function: This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a "molecular matchmaker", a protein that promotes the formation of a stable complex between two or more DNA-bindi
COG id: COG0323
COG function: function code L; DNA mismatch repair enzyme (predicted ATPase)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA mismatch repair mutL/hexB family [H]
Homologues:
Organism=Homo sapiens, GI4557757, Length=329, Percent_Identity=36.4741641337386, Blast_Score=212, Evalue=1e-54, Organism=Homo sapiens, GI4505911, Length=417, Percent_Identity=26.8585131894484, Blast_Score=142, Evalue=1e-33, Organism=Homo sapiens, GI189458898, Length=417, Percent_Identity=26.8585131894484, Blast_Score=141, Evalue=2e-33, Organism=Homo sapiens, GI189458896, Length=399, Percent_Identity=26.5664160401003, Blast_Score=134, Evalue=2e-31, Organism=Homo sapiens, GI4505913, Length=340, Percent_Identity=27.6470588235294, Blast_Score=131, Evalue=3e-30, Organism=Homo sapiens, GI310128478, Length=340, Percent_Identity=27.6470588235294, Blast_Score=130, Evalue=3e-30, Organism=Homo sapiens, GI263191589, Length=235, Percent_Identity=31.063829787234, Blast_Score=112, Evalue=1e-24, Organism=Homo sapiens, GI310128480, Length=302, Percent_Identity=24.1721854304636, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI91992162, Length=264, Percent_Identity=25.7575757575758, Blast_Score=91, Evalue=2e-18, Organism=Homo sapiens, GI91992160, Length=264, Percent_Identity=25.7575757575758, Blast_Score=91, Evalue=3e-18, Organism=Escherichia coli, GI1790612, Length=624, Percent_Identity=46.6346153846154, Blast_Score=484, Evalue=1e-138, Organism=Caenorhabditis elegans, GI71991825, Length=322, Percent_Identity=35.7142857142857, Blast_Score=194, Evalue=9e-50, Organism=Caenorhabditis elegans, GI17562796, Length=349, Percent_Identity=25.7879656160458, Blast_Score=121, Evalue=1e-27, Organism=Saccharomyces cerevisiae, GI6323819, Length=318, Percent_Identity=38.3647798742138, Blast_Score=194, Evalue=3e-50, Organism=Saccharomyces cerevisiae, GI6324247, Length=342, Percent_Identity=27.7777777777778, Blast_Score=107, Evalue=7e-24, Organism=Saccharomyces cerevisiae, GI6325093, Length=435, Percent_Identity=25.9770114942529, Blast_Score=100, Evalue=9e-22, Organism=Saccharomyces cerevisiae, GI6323063, Length=366, Percent_Identity=24.8633879781421, Blast_Score=91, Evalue=4e-19, Organism=Drosophila melanogaster, GI17136968, Length=338, Percent_Identity=36.094674556213, Blast_Score=189, Evalue=5e-48, Organism=Drosophila melanogaster, GI17136970, Length=357, Percent_Identity=26.0504201680672, Blast_Score=113, Evalue=3e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR002099 - InterPro: IPR013507 - InterPro: IPR014762 - InterPro: IPR020667 - InterPro: IPR014763 - InterPro: IPR014790 - InterPro: IPR020568 - InterPro: IPR014721 [H]
Pfam domain/function: PF01119 DNA_mis_repair; PF02518 HATPase_c; PF08676 MutL_C [H]
EC number: NA
Molecular weight: Translated: 71876; Mature: 71745
Theoretical pI: Translated: 5.70; Mature: 5.70
Prosite motif: PS00058 DNA_MISMATCH_REPAIR_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNG CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEECCC SGIPKDELALALSRHATSKLHSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEECCCHHHHHH WQAYAEGVDMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH VRGDIHFTLTHNGKTVRNYRPAMNEPQYLQRLTQVAGRQFADEALRVECQHDDLRLSGYL HCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECEE QSPWSTVLTDTHYFYVNGRLVRDRLVNHAVRQAFAQKAEVEQPGYVLMLDIDPHQVDVNV CCCHHHHHCCCEEEEECCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE HPAKHEVRFHQSRYVHDYILQALQSALEEAGELGFEHPFEPSSPQVRDEVSLSESGTQTQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCC TEHHAFELQSPESKTHSTWNEASRVDTSRVEISRDSQLTERTRDIASARPYSGVQSNAYG HHHHEEEECCCCCCCCCCHHHHHHCCCHHEEECCCHHHHHHHHHHHCCCCCCCCCCCCCC SMAVPRESRSGPTGESRARAELPSKAAIASYGELLQTPSYSVQDKPYQPVLAMPAMLNGQ CCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCHHHCCCC YWVLAQGQNLSLLPIQSVALATRSHEIETKLATGLIGQPLLMPVSIAADTDWPALLEEHE EEEEECCCCCEEEEHHHHHHHHHCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHH TLIRQLGLELTIRYQQLIIKKVPPYLRDSQLAKVIPEWLQSLRFEAPAPNALAVWLAEQS HHHHHCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHH LTGFTSAADIWAAYSQLTEEKRQQIADKAVSLPWQSWLEEQAIE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC >Mature Secondary Structure GIQILPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIEIDKGGSKLIKIRDNG CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEECCC SGIPKDELALALSRHATSKLHSLDDLEAILSFGFRGEALASISSVSRLTLTSRTAEQTEA CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHEECCCHHHHHH WQAYAEGVDMAVKVMPAAHPVGSTIEVVDLFFNTPARRRFLKSDKTEFTHIDEWLKRIAL HHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHH VRGDIHFTLTHNGKTVRNYRPAMNEPQYLQRLTQVAGRQFADEALRVECQHDDLRLSGYL HCCCEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEECEE QSPWSTVLTDTHYFYVNGRLVRDRLVNHAVRQAFAQKAEVEQPGYVLMLDIDPHQVDVNV CCCHHHHHCCCEEEEECCEEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEE HPAKHEVRFHQSRYVHDYILQALQSALEEAGELGFEHPFEPSSPQVRDEVSLSESGTQTQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHCCCCCCCCCCCC TEHHAFELQSPESKTHSTWNEASRVDTSRVEISRDSQLTERTRDIASARPYSGVQSNAYG HHHHEEEECCCCCCCCCCHHHHHHCCCHHEEECCCHHHHHHHHHHHCCCCCCCCCCCCCC SMAVPRESRSGPTGESRARAELPSKAAIASYGELLQTPSYSVQDKPYQPVLAMPAMLNGQ CCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCHHHCHHHCCCC YWVLAQGQNLSLLPIQSVALATRSHEIETKLATGLIGQPLLMPVSIAADTDWPALLEEHE EEEEECCCCCEEEEHHHHHHHHHCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHH TLIRQLGLELTIRYQQLIIKKVPPYLRDSQLAKVIPEWLQSLRFEAPAPNALAVWLAEQS HHHHHCCCCEEEHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHH LTGFTSAADIWAAYSQLTEEKRQQIADKAVSLPWQSWLEEQAIE CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA