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The map label for this gene is rbn [C]

Identifier: 113968660

GI number: 113968660

Start: 343006

End: 344019

Strand: Direct

Name: rbn [C]

Synonym: Shewmr4_0316

Alternate gene names: 113968660

Gene position: 343006-344019 (Clockwise)

Preceding gene: 113968655

Following gene: 113968661

Centisome position: 7.29

GC content: 50.2

Gene sequence:

>1014_bases
GTGACTAAGAAGATAGAACTGGCACAAATTCAAGTCTTATTCCTCGGGATCTGGCGCTTCCTGCTGCATTTACGCCAGCG
TTTAGTGGAAGATCAAATCAATATCCGCGCGGGCCACCTAGCCTATGTCACCCTGTTATCCCTTGTGCCTATGGTGGCTG
TGACTATGTCTATGCTGTCGGCTTTCCCTGTGTTTAAGGGGATCCGTGGCCAAATCGAAGCCTTCGTGTACGAGAATTTT
CTGCCCGCGGCGGGCGATACGGTACAAGTCTATATTAATGAATTTGTTGGTAATGCTTCTAAGGGCACGGCTGTAGGGAT
CGCGGCTCTTGTCGTGGTGGCGATTATGCTGATCTCCGCCATCGATAAATCGCTGAATAATATTTGGCGCACTAAGGAAA
AGCGTTCCGTGGTGGTGGCATTTTCCATGTATTGGATGGTGATTACCTTAGGCCCTGTGCTGGTGGGCGCGAGCTTAGTG
GCGACTTCCTACGTGGTGTCATTAAAACTGTTTGAGGGCGACGCATTATCTGGGGTGATGCCACTGTTTATCGAACGTTT
ACCACTGTTTTTTTCTGTCGCCGCATTCTTACTTTTATATATGGTGGTGCCGAATCAAAAGGTGAAGTTTTGGCATGCGC
TATTAGGCGCGGTAGTGGCGGCGTTACTGTTCGAGTTGGGGAAAAAAGGTTTTGCCCTGTATGTGACTAAATTCCCAAGT
TATGAAGCCATTTACGGCGCTCTGGCGACCATTCCTATTCTGTTCGTTTGGGTATATTTATCTTGGATGATAGTGCTGCT
GGGCGCCGAAATTACCGCGGCCATGCCCGAGTATTTGGACTATGAGTCCAGCAGCGATATCAACGAAACTAACCTCGATG
GTCAACCTTTAGCGGCGCAGGATACACCCGCCGCGCAGCCAGAAACCACATCCGGCCAATCAACCCAAGTGCTTGAGACG
ACAGGCGAACTCGCTGCAACCGCGCCGCAATCGACTACACTGGATAAGCCGTAG

Upstream 100 bases:

>100_bases
CAGATCCTTGTTGTGACATCAATTCACTCCTTAGACTTGTAAATTAAGTGTTTATTGTACGAAGATAACGAGTCAATACC
AACAGAATCAAGAGAAACCC

Downstream 100 bases:

>100_bases
CTAAGTTGTTATCCACCAAGACATTCAGCGAGCCTTATCCCATCTATGATCACTGACGCCCATCAGCTTGCCCCTTTTAT
CCGCCGTGATTGGCTGATGA

Product: ribonuclease BN

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MTKKIELAQIQVLFLGIWRFLLHLRQRLVEDQINIRAGHLAYVTLLSLVPMVAVTMSMLSAFPVFKGIRGQIEAFVYENF
LPAAGDTVQVYINEFVGNASKGTAVGIAALVVVAIMLISAIDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLV
ATSYVVSLKLFEGDALSGVMPLFIERLPLFFSVAAFLLLYMVVPNQKVKFWHALLGAVVAALLFELGKKGFALYVTKFPS
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSSDINETNLDGQPLAAQDTPAAQPETTSGQSTQVLET
TGELAATAPQSTTLDKP

Sequences:

>Translated_337_residues
MTKKIELAQIQVLFLGIWRFLLHLRQRLVEDQINIRAGHLAYVTLLSLVPMVAVTMSMLSAFPVFKGIRGQIEAFVYENF
LPAAGDTVQVYINEFVGNASKGTAVGIAALVVVAIMLISAIDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLV
ATSYVVSLKLFEGDALSGVMPLFIERLPLFFSVAAFLLLYMVVPNQKVKFWHALLGAVVAALLFELGKKGFALYVTKFPS
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSSDINETNLDGQPLAAQDTPAAQPETTSGQSTQVLET
TGELAATAPQSTTLDKP
>Mature_336_residues
TKKIELAQIQVLFLGIWRFLLHLRQRLVEDQINIRAGHLAYVTLLSLVPMVAVTMSMLSAFPVFKGIRGQIEAFVYENFL
PAAGDTVQVYINEFVGNASKGTAVGIAALVVVAIMLISAIDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLVA
TSYVVSLKLFEGDALSGVMPLFIERLPLFFSVAAFLLLYMVVPNQKVKFWHALLGAVVAALLFELGKKGFALYVTKFPSY
EAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSSDINETNLDGQPLAAQDTPAAQPETTSGQSTQVLETT
GELAATAPQSTTLDKP

Specific function: 3' To 5' Exoribonuclease Necessary For 3'Maturation Of tRNA Molecules. [C]

COG id: COG1295

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0761 family [H]

Homologues:

Organism=Escherichia coli, GI1790319, Length=280, Percent_Identity=50, Blast_Score=276, Evalue=2e-75,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017039
- InterPro:   IPR004664 [H]

Pfam domain/function: PF03631 Ribonuclease_BN [H]

EC number: 3.1.-.- [C]

Molecular weight: Translated: 36853; Mature: 36722

Theoretical pI: Translated: 5.36; Mature: 5.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKIELAQIQVLFLGIWRFLLHLRQRLVEDQINIRAGHLAYVTLLSLVPMVAVTMSMLS
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AFPVFKGIRGQIEAFVYENFLPAAGDTVQVYINEFVGNASKGTAVGIAALVVVAIMLISA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
IDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLVATSYVVSLKLFEGDALSGVM
HHHHHHHHHHCHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHH
PLFIERLPLFFSVAAFLLLYMVVPNQKVKFWHALLGAVVAALLFELGKKGFALYVTKFPS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSSDINETNLDGQPLAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
DTPAAQPETTSGQSTQVLETTGELAATAPQSTTLDKP
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
TKKIELAQIQVLFLGIWRFLLHLRQRLVEDQINIRAGHLAYVTLLSLVPMVAVTMSMLS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
AFPVFKGIRGQIEAFVYENFLPAAGDTVQVYINEFVGNASKGTAVGIAALVVVAIMLISA
HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
IDKSLNNIWRTKEKRSVVVAFSMYWMVITLGPVLVGASLVATSYVVSLKLFEGDALSGVM
HHHHHHHHHHCHHHCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHH
PLFIERLPLFFSVAAFLLLYMVVPNQKVKFWHALLGAVVAALLFELGKKGFALYVTKFPS
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC
YEAIYGALATIPILFVWVYLSWMIVLLGAEITAAMPEYLDYESSSDINETNLDGQPLAAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
DTPAAQPETTSGQSTQVLETTGELAATAPQSTTLDKP
CCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA