Click here to switch to the map view.

The map label for this gene is nirD [H]

Identifier: 116696216

GI number: 116696216

Start: 2580010

End: 2580999

Strand: Direct

Name: nirD [H]

Synonym: H16_B2280

Alternate gene names: 116696216

Gene position: 2580010-2580999 (Clockwise)

Preceding gene: 116696215

Following gene: 116696217

Centisome position: 88.58

GC content: 72.53

Gene sequence:

>990_bases
ATGTACGATGAACTGAGCGTCTACGACACCCTGCAGCGCGATTTCCCGCTGCAGCCGCGGCCCTACCAGGCGCTGGCCGG
CAAGCTCGGCCTGTGCGAGCACACGCTGCTGAGCCTGCTGGCGCGCGACCTGGGCAACGGGCGCATCAGCCGCGTCGGCG
CGGTGTTCGCGCCCAACGTGATCGGCGTCAGCACGCTGGCGGCGCTGTCCGTGCCGCCGGCCCAGCTGGACCGCGTGGCG
GCGCGCGTCAGTGCCTGCGCGGCGGTCAGCCACAACTATGCGCGCAGCGGCCATCCGTGCAACCTGTGGTTCGTCGCGGG
CGCGCGCGAGCGCCGCATGCTCGATGTCACGCTGGCGTCGATCGGGGAAATGACCGGCCTGGCGCCGCTGGACCTGCCCA
TGGCCCGCGAGTATCACATCGACCTCGGCTTCCCGCTCGCGCGCCCGGGCAGCGCACGCGCCCGCCGCGCTGCCAGCGCG
GCCGCTCCCGCCGCGCCTGTCGCCCTGGACGATGACGACTGGCGCCTGGTGGCCGCACTGGAAGCCGGCCTGCCGCTGAC
GCCACGCCCGTTCCACGCACTGGCAGCGCAAGCGCGGATGGCGATGCCTCAGGTCCTGGAGCGGCTGACGCGCTGGTCCG
CGCAGGGCGTGATCCGGCGCCTGGGCGTGGTGCTGCAGCATGGGCGCTTCGGCTTCGGCCACAACGCCATGTGCGTGTGG
GATGTGCCCGACGCGCACGTGGACGCCATCGGCATGCGGCTGGCGCGGCTGGCGCGCGTGACCCTGTGCTACCGCCGCGC
GCGCCGGCTGCCCGACTGGCCCTACAACCTGTTTGCGATGGTCCATGCGCGCAATGCGCAAGACTTGCTGCCCGCGCTGG
CGCGCATCCATGCCACCGCCGGGCTGGAACATGCGCCCGGGACCGTGCTGGTCGGCACGCGCTGCTACAAGCAGCGCGGC
ACACGCTATGCCATGCAGGTGTCGGCATGA

Upstream 100 bases:

>100_bases
CACCGCCAGCCTGGCGCGAATTGCCACGCTGCCCGCCGACAGCCCCAGCGGCATCTTCTTCACCGTGCGCGCGCAACGGT
TCGGCATGTAAAGGGACACC

Downstream 100 bases:

>100_bases
CCCGTGCCATCGCCGCACTCGACCCGCTCGACCGCCGCATCATCAACGCGCTGCAGCGCGGCCTGCCCCTGGTGCCGCAT
CCGTATGCCGAAGCGGCGGC

Product: heme d1 biosynthesis protein (NirD)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MYDELSVYDTLQRDFPLQPRPYQALAGKLGLCEHTLLSLLARDLGNGRISRVGAVFAPNVIGVSTLAALSVPPAQLDRVA
ARVSACAAVSHNYARSGHPCNLWFVAGARERRMLDVTLASIGEMTGLAPLDLPMAREYHIDLGFPLARPGSARARRAASA
AAPAAPVALDDDDWRLVAALEAGLPLTPRPFHALAAQARMAMPQVLERLTRWSAQGVIRRLGVVLQHGRFGFGHNAMCVW
DVPDAHVDAIGMRLARLARVTLCYRRARRLPDWPYNLFAMVHARNAQDLLPALARIHATAGLEHAPGTVLVGTRCYKQRG
TRYAMQVSA

Sequences:

>Translated_329_residues
MYDELSVYDTLQRDFPLQPRPYQALAGKLGLCEHTLLSLLARDLGNGRISRVGAVFAPNVIGVSTLAALSVPPAQLDRVA
ARVSACAAVSHNYARSGHPCNLWFVAGARERRMLDVTLASIGEMTGLAPLDLPMAREYHIDLGFPLARPGSARARRAASA
AAPAAPVALDDDDWRLVAALEAGLPLTPRPFHALAAQARMAMPQVLERLTRWSAQGVIRRLGVVLQHGRFGFGHNAMCVW
DVPDAHVDAIGMRLARLARVTLCYRRARRLPDWPYNLFAMVHARNAQDLLPALARIHATAGLEHAPGTVLVGTRCYKQRG
TRYAMQVSA
>Mature_329_residues
MYDELSVYDTLQRDFPLQPRPYQALAGKLGLCEHTLLSLLARDLGNGRISRVGAVFAPNVIGVSTLAALSVPPAQLDRVA
ARVSACAAVSHNYARSGHPCNLWFVAGARERRMLDVTLASIGEMTGLAPLDLPMAREYHIDLGFPLARPGSARARRAASA
AAPAAPVALDDDDWRLVAALEAGLPLTPRPFHALAAQARMAMPQVLERLTRWSAQGVIRRLGVVLQHGRFGFGHNAMCVW
DVPDAHVDAIGMRLARLARVTLCYRRARRLPDWPYNLFAMVHARNAQDLLPALARIHATAGLEHAPGTVLVGTRCYKQRG
TRYAMQVSA

Specific function: Required for the biosynthesis of heme D1 of nitrite reductase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011991 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35838; Mature: 35838

Theoretical pI: Translated: 10.28; Mature: 10.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYDELSVYDTLQRDFPLQPRPYQALAGKLGLCEHTLLSLLARDLGNGRISRVGAVFAPNV
CCCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
IGVSTLAALSVPPAQLDRVAARVSACAAVSHNYARSGHPCNLWFVAGARERRMLDVTLAS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEHHHHHHH
IGEMTGLAPLDLPMAREYHIDLGFPLARPGSARARRAASAAAPAAPVALDDDDWRLVAAL
HHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCEEEEEE
EAGLPLTPRPFHALAAQARMAMPQVLERLTRWSAQGVIRRLGVVLQHGRFGFGHNAMCVW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
DVPDAHVDAIGMRLARLARVTLCYRRARRLPDWPYNLFAMVHARNAQDLLPALARIHATA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEECCCHHHHHHHHHHHHHHC
GLEHAPGTVLVGTRCYKQRGTRYAMQVSA
CCCCCCCEEEECCHHHHHCCCEEEEEECC
>Mature Secondary Structure
MYDELSVYDTLQRDFPLQPRPYQALAGKLGLCEHTLLSLLARDLGNGRISRVGAVFAPNV
CCCCHHHHHHHHHCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCH
IGVSTLAALSVPPAQLDRVAARVSACAAVSHNYARSGHPCNLWFVAGARERRMLDVTLAS
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCEEHHHHHHH
IGEMTGLAPLDLPMAREYHIDLGFPLARPGSARARRAASAAAPAAPVALDDDDWRLVAAL
HHHHCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHCCCCCCEEECCCCCEEEEEE
EAGLPLTPRPFHALAAQARMAMPQVLERLTRWSAQGVIRRLGVVLQHGRFGFGHNAMCVW
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
DVPDAHVDAIGMRLARLARVTLCYRRARRLPDWPYNLFAMVHARNAQDLLPALARIHATA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHEEECCCHHHHHHHHHHHHHHC
GLEHAPGTVLVGTRCYKQRGTRYAMQVSA
CCCCCCCEEEECCHHHHHCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7747927 [H]