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The map label for this gene is cspA [H]

Identifier: 116696141

GI number: 116696141

Start: 2503821

End: 2504024

Strand: Direct

Name: cspA [H]

Synonym: H16_B2205

Alternate gene names: 116696141

Gene position: 2503821-2504024 (Clockwise)

Preceding gene: 116696130

Following gene: 116696142

Centisome position: 85.97

GC content: 56.86

Gene sequence:

>204_bases
ATGGAAACCGGTACCGTTAAGTGGTTCAACGACGCCAAGGGCTTCGGCTTCATCACGCCGGATGAAGGCGGCAACGATCT
GTTCGCGCACTTCTCCGCAATCGAAGGCAATGGCTTCAAGTCGTTGAAGGAAGGCCAGAAGGTACGCTACGTCAAGGCCA
TGGGCCAGAAGGGCGAGCAAGCCACCAAGATTCAGGCCCTCTGA

Upstream 100 bases:

>100_bases
AATGCGCTGGCGGGGAACATAAAAAGGATCCGCTGGGTGCGTTGCACACGGTGTATAACGAGCGTTTTCGCTCATTTTGA
AATTCAAGGTTGAGATAGAT

Downstream 100 bases:

>100_bases
TACCGGTGGATTCCGGGCCGGTCCAGCGGACCGGCCGGAAGGAAAGCCCCGCAGCTTCGGCGCGGGGCTTTTTTTATTGG
CGCGCCGGCACCGGGGCCGC

Product: cold shock protein, DNA-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 67; Mature: 67

Protein sequence:

>67_residues
METGTVKWFNDAKGFGFITPDEGGNDLFAHFSAIEGNGFKSLKEGQKVRYVKAMGQKGEQATKIQAL

Sequences:

>Translated_67_residues
METGTVKWFNDAKGFGFITPDEGGNDLFAHFSAIEGNGFKSLKEGQKVRYVKAMGQKGEQATKIQAL
>Mature_67_residues
METGTVKWFNDAKGFGFITPDEGGNDLFAHFSAIEGNGFKSLKEGQKVRYVKAMGQKGEQATKIQAL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=59.375, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1786841, Length=64, Percent_Identity=57.8125, Blast_Score=82, Evalue=7e-18,
Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=58.4615384615385, Blast_Score=82, Evalue=8e-18,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=56.25, Blast_Score=80, Evalue=2e-17,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=53.8461538461538, Blast_Score=79, Evalue=6e-17,
Organism=Escherichia coli, GI1787834, Length=65, Percent_Identity=55.3846153846154, Blast_Score=75, Evalue=5e-16,
Organism=Escherichia coli, GI1787839, Length=62, Percent_Identity=51.6129032258064, Blast_Score=70, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24658520, Length=63, Percent_Identity=42.8571428571429, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: 8300 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7326; Mature: 7326

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METGTVKWFNDAKGFGFITPDEGGNDLFAHFSAIEGNGFKSLKEGQKVRYVKAMGQKGEQ
CCCCCEEEECCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCEEHHHHHHCCCCCC
ATKIQAL
CEEEECC
>Mature Secondary Structure
METGTVKWFNDAKGFGFITPDEGGNDLFAHFSAIEGNGFKSLKEGQKVRYVKAMGQKGEQ
CCCCCEEEECCCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCEEHHHHHHCCCCCC
ATKIQAL
CEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12910271 [H]